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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235915 (57 seq.)
>W1711467065
MJNC01000001
Gammaproteobacteria
Buchnera aphidicola (Myzus persicae) [MJNC]
66277
66203
-
Thr
TGT
[ENA]
¡û
>C171018853
CP012849
Gammaproteobacteria
Candidatus Riesia sp. GBBU [CP012849]
30464
30538
+
Thr
TGT
-
¡û
>C171022195
CP013259
Gammaproteobacteria
Buchnera aphidicola [Diuraphis noxia] [CP013259]
49061
48987
-
Thr
TGT
-
¡û
>C171130394
LT635893
Gammaproteobacteria
Buchnera aphidicola Bcipseudotaxifoliae [LT635893]
33538
33466
-
Thr
TGT
-
¡û
>C171130425
LT667500
Gammaproteobacteria
Buchnera aphidicola BCifornacula [LT667500]
33713
33641
-
Thr
TGT
-
¡û
>C171130456
LT667503
Gammaproteobacteria
Buchnera aphidicola Bciconfinis [LT667503]
33697
33625
-
Thr
TGT
-
¡û
>C001832
AE016826
Gammaproteobacteria
Buchnera aphidicola str. Bp [Baizongia pistaciae] [AE016826]
51021
50949
-
Thr
TGT
[Ensembl]
¡û
>C004650
BA000003
Gammaproteobacteria
Buchnera aphidicola str. APS [Acyrthosiphon pisum] [BA000003]
48843
48771
-
Thr
TGT
[Ensembl]
¡û
>WENV181405325
OGCD01001092
[OGCD] insect metagenome; haemolymph
1201
1129
-
Thr
TGT
[ENA]
¢þ
>WENV170000287
AEWW01004023
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
111
186
+
Thr
TGT
[ENA]
¢þ
>WENV170001598
AGFS01101911
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
111
186
+
Thr
TGT
[ENA]
¢þ
>WENV170002037
AGFT01080948
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
48
123
+
Thr
TGT
[ENA]
¢þ
>C181141258
CP026803
Gammaproteobacteria
Shigella flexneri 89-141 [CP026803]
1947686
1947611
-
Thr
TGT
-
¡û
>C181175410
CP029161
Gammaproteobacteria
Buchnera aphidicola [Melanaphis sacchari] LSU [CP029161]
577404
577476
+
Thr
TGT
-
¡û
>W09121559
ACFK01000001
Gammaproteobacteria
Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum) [ACFK]
48845
48773
-
Thr
TGT
[ENA]
¡û
>C191094380
CP032759
Gammaproteobacteria
Buchnera aphidicola [Rhopalosiphum maidis] BTI [CP032759]
87677
87749
+
Thr
TGT
-
¡û
>C191132461
CP034855
Gammaproteobacteria
Buchnera aphidicola [Sitobion avenae] Sav [CP034855]
48682
48610
-
Thr
TGT
-
¡û
>C191132493
CP034861
Gammaproteobacteria
Buchnera aphidicola [Muscaphis stroyani] Mst [CP034861]
45320
45248
-
Thr
TGT
-
¡û
>C191132525
CP034867
Gammaproteobacteria
Buchnera aphidicola [Macrosiphum gaurae] Mga [CP034867]
48790
48718
-
Thr
TGT
-
¡û
>C191132557
CP034873
Gammaproteobacteria
Buchnera aphidicola [Hyadaphis tataricae] Hta [CP034873]
48724
48650
-
Thr
TGT
-
¡û
>C191177562
CP040443
Gammaproteobacteria
Escherichia sp. E4742 [CP040443]
4258795
4258870
+
Thr
TGT
-
¡û
>C09101344
CP001161
Gammaproteobacteria
Buchnera aphidicola str. 5A [Acyrthosiphon pisum] [CP001161]
48840
48768
-
Thr
TGT
[Ensembl]
¡û
>C09101376
CP001158
Gammaproteobacteria
Buchnera aphidicola str. Tuc7 [Acyrthosiphon pisum] [CP001158]
48855
48783
-
Thr
TGT
[Ensembl]
¡û
>W1911390776
NWBG01000093
Gammaproteobacteria
Escherichia coli 2185 [NWBG]
1443
1368
-
Thr
TGT
[ENA]
¡û
>W1911574658
PDHY01000022
Gammaproteobacteria
Escherichia sp. E4742 [PDHY]
46444
46369
-
Thr
TGT
[ENA]
¡û
>W1911824558
QZWI01000022
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
4213
4138
-
Thr
TGT
[ENA]
¡û
>W1810080783
PENQ01000026
Gammaproteobacteria
Escherichia coli ABU 65 [PENQ]
48818
48893
+
Thr
TGT
[ENA]
¡û
>C151001028
AP012551
Gammaproteobacteria
Plautia stali symbiont [AP012551]
90376
90301
-
Thr
TGT
[Ensembl]
¡û
>C151003534
CP002697
Gammaproteobacteria
Buchnera aphidicola str. USDA [Myzus persicae] [CP002697]
49279
49205
-
Thr
TGT
[Ensembl]
¡û
>C151003566
CP002699
Gammaproteobacteria
Buchnera aphidicola str. W106 [Myzus persicae] [CP002699]
49280
49206
-
Thr
TGT
[Ensembl]
¡û
>C151003598
CP002701
Gammaproteobacteria
Buchnera aphidicola str. G002 [Myzus persicae] [CP002701]
49279
49205
-
Thr
TGT
[Ensembl]
¡û
>C151003630
CP002703
Gammaproteobacteria
Buchnera aphidicola str. F009 [Myzus persicae] [CP002703]
49278
49204
-
Thr
TGT
[Ensembl]
¡û
>C151046596
CP009253
Gammaproteobacteria
Buchnera aphidicola [Aphis glycines] BAg [CP009253]
47500
47428
-
Thr
TGT
-
¡û
>WENV11100645
AEWW01004023
[AEWW] ant fungus garden metagenome; Atta cephalotes fungus garden
111
186
+
Thr
TGT
[ENA]
¡û
>WENV11101670
AGFS01101911
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
111
186
+
Thr
TGT
[ENA]
¡û
>WENV11102109
AGFT01080948
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
48
123
+
Thr
TGT
[ENA]
¡û
>C11102013
CP002303
Gammaproteobacteria
Buchnera aphidicola str. JF98 [Acyrthosiphon pisum] [CP002303]
48856
48784
-
Thr
TGT
[Ensembl]
¡û
>C11102045
CP002302
Gammaproteobacteria
Buchnera aphidicola str. JF99 [Acyrthosiphon pisum] [CP002302]
48841
48769
-
Thr
TGT
[Ensembl]
¡û
>C11102077
CP002300
Gammaproteobacteria
Buchnera aphidicola str. LL01 [Acyrthosiphon pisum] [CP002300]
48860
48788
-
Thr
TGT
[Ensembl]
¡û
>C11102109
CP002301
Gammaproteobacteria
Buchnera aphidicola str. TLW03 [Acyrthosiphon pisum] [CP002301]
48862
48790
-
Thr
TGT
[Ensembl]
¡û
>C11102141
CP002648
Gammaproteobacteria
Buchnera aphidicola str. Ua [Uroleucon ambrosiae] [CP002648]
48105
48033
-
Thr
TGT
[Ensembl]
¡û
>C11102173
CP002645
Gammaproteobacteria
Buchnera aphidicola str. Ak [Acyrthosiphon kondoi] [CP002645]
48775
48703
-
Thr
TGT
[Ensembl]
¡û
>C11102204
CP001817
Gammaproteobacteria
Buchnera aphidicola [Cinara tujafilina] [CP001817]
33633
33561
-
Thr
TGT
[Ensembl]
¡û
>W1511041943
JHSO01000004
Gammaproteobacteria
Escherichia coli 702423 [JHSO]
18407
18331
-
Thr
TGT
[ENA]
¡û
>W11161985
AFGX01000042
Gammaproteobacteria
Shigella flexneri K-272 [AFGX]
4781
4706
-
Thr
TGT
[ENA]
¡û
>W11162065
AFGY01000025
Gammaproteobacteria
Shigella flexneri K-227 [AFGY]
547
472
-
Thr
TGT
[ENA]
¡û
>W11162069
AFGY01000027
Gammaproteobacteria
Shigella flexneri K-227 [AFGY]
17472
17397
-
Thr
TGT
[ENA]
¡û
>C161028779
CP010829
Gammaproteobacteria
Shigella sonnei FORC_011 [CP010829]
2937382
2937307
-
Thr
TGT
-
¡û
>C161028791
CP010829
Gammaproteobacteria
Shigella sonnei FORC_011 [CP010829]
1876979
1876904
-
Thr
TGT
-
¡û
>C161033875
CP011299
Gammaproteobacteria
Buchnera aphidicola [Schlechtendalia chinensis] SC [CP011299]
48428
48356
-
Thr
TGT
[Ensembl]
¡û
>C161039873
CP012140
Gammaproteobacteria
Shigella flexneri 4c 1205 [CP012140]
739072
739147
+
Thr
TGT
-
¡û
>C161039885
CP012140
Gammaproteobacteria
Shigella flexneri 4c 1205 [CP012140]
1298027
1298102
+
Thr
TGT
-
¡û
>C161039942
CP012140
Gammaproteobacteria
Shigella flexneri 4c 1205 [CP012140]
1844647
1844572
-
Thr
TGT
-
¡û
>C161050105
CP013046
Gammaproteobacteria
Serratia marcescens B3R3 [CP013046]
723441
723516
+
Thr
TGT
[Ensembl]
¡û
>C161058803
CP013662
Gammaproteobacteria
Escherichia coli 08-00022 [CP013662]
1501765
1501840
+
Thr
TGT
-
¡û
>W1610589776
LDQX01000044
Gammaproteobacteria
Pantoea ananatis [LDQX]
4797
4872
+
Thr
TGT
[ENA]
¡û
>W1610733812
LMLI01000013
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
783
708
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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