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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235939 (52 seq.)
>C025653
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
1577000
1577075
+
Phe
GAA
-
¡û
>C025793
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
1224430
1224355
-
Phe
GAA
[Ensembl]
¡û
>W141070778
ASGQ01000013
Thermotogota
Thermotoga neapolitana LA10 [ASGQ]
44336
44411
+
Phe
GAA
[ENA]
¡û
>W141082676
AUNF01000077
Thermotogota
Thermotoga sp. A7A [AUNF]
22467
22542
+
Phe
GAA
[ENA]
¡û
>WENV181407858
OGCH01000139
[OGCH] hot springs metagenome; hot springs
5736
5661
-
Phe
GAA
[ENA]
¢þ
>C08011020
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
841399
841327
-
Phe
GAA
[Ensembl]
¡û
>C08010893
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
1280907
1280982
+
Phe
GAA
[Ensembl]
¡û
>WENV170675736
LDZQ01000398
[LDZQ] terrestrial metagenome; oil reservoir sample I2
16504
16579
+
Phe
GAA
[ENA]
¢þ
>WENV170676078
LDZR01000805
[LDZR] terrestrial metagenome; oil reservoir sample K2
1178
1253
+
Phe
GAA
[ENA]
¢þ
>WENV170676463
LDZR01002707
[LDZR] terrestrial metagenome; oil reservoir sample K2
306
231
-
Phe
GAA
[ENA]
¢þ
>WENV170676764
LDZS01002191
[LDZS] terrestrial metagenome; oil reservoir sample K3
462
537
+
Phe
GAA
[ENA]
¢þ
>W141561631
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
293986
294061
+
Phe
GAA
[ENA]
¡û
>W09107430
ABIJ01000007
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
77022
76947
-
Phe
GAA
[ENA]
¡û
>W09112218
ABXR01000011
Thermotogota
Marinitoga piezophila KA3 [ABXR]
76279
76204
-
Phe
GAA
[ENA]
¡û
>W141778868
JONI01000006
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
64614
64539
-
Phe
GAA
[ENA]
¡û
>C141000356
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
836049
835974
-
Phe
GAA
-
¡û
>C141000366
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
739863
739938
+
Phe
GAA
-
¡û
>C141011534
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
1238250
1238175
-
Phe
GAA
-
¡û
>W1910635469
LNDD01000005
Thermotogota
Thermotoga sp. SG1 [LNDD]
324214
324289
+
Phe
GAA
[ENA]
¡û
>W1910635485
LNDE01000001
Thermotogota
Thermotoga sp. KOL6 [LNDE]
689498
689573
+
Phe
GAA
[ENA]
¡û
>C09110642
CP000916
Thermotogota
Thermotoga neapolitana DSM 4359 [CP000916]
1137895
1137970
+
Phe
GAA
[Ensembl]
¡û
>C151001665
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
914592
914517
-
Phe
GAA
-
¡û
>C151004269
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
1265557
1265632
+
Phe
GAA
[Ensembl]
¡û
>C151004325
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
1222758
1222683
-
Phe
GAA
[Ensembl]
¡û
>C151030630
CP007633
Thermotogota
Thermotoga sp. RQ7 [CP007633]
1410326
1410401
+
Phe
GAA
[Ensembl]
¡û
>C151074613
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
1566988
1567063
+
Phe
GAA
[Ensembl]
¡û
>C151076967
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
1577016
1577091
+
Phe
GAA
[Ensembl]
¡û
>C151077013
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
1577016
1577091
+
Phe
GAA
[Ensembl]
¡û
>W10105850
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
56975
57050
+
Phe
GAA
[ENA]
¡û
>C10113505
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
1247796
1247721
-
Phe
GAA
[Ensembl]
¡û
>W11108170
ACXW01000008
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
56975
57050
+
Phe
GAA
[ENA]
¡û
>C11123132
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
406666
406741
+
Phe
GAA
[Ensembl]
¡û
>W11180797
AGIJ01000002
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
224515
224590
+
Phe
GAA
[ENA]
¡û
>C161005086
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
1534095
1534170
+
Phe
GAA
[Ensembl]
¡û
>W121062192
AJII01000011
Thermotogota
Thermotoga sp. EMP [AJII]
146203
146278
+
Phe
GAA
[ENA]
¡û
>C131012503
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
1577018
1577093
+
Phe
GAA
-
¡û
>W1610540324
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
53222
53147
-
Phe
GAA
[ENA]
¡û
>W1610540381
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58051
58126
+
Phe
GAA
[ENA]
¡û
>W1610540416
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
53011
52936
-
Phe
GAA
[ENA]
¡û
>W1610540496
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49465
49540
+
Phe
GAA
[ENA]
¡û
>W1610612538
LGEV01000031
Thermotogota
Thermotoga sp. 50_64 [LGEV]
16504
16579
+
Phe
GAA
[ENA]
¡û
>W1610612898
LGFF01000184
Thermotogota
Pseudothermotoga lettingae [LGFF]
1178
1253
+
Phe
GAA
[ENA]
¡û
>W1610612968
LGFH01000031
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
306
231
-
Phe
GAA
[ENA]
¡û
>W1610613154
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
462
537
+
Phe
GAA
[ENA]
¡û
>W1710643345
JSFG01000006
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
53222
53147
-
Phe
GAA
[ENA]
¡û
>W1710643402
JSFH01000008
Thermotogota
Thermotoga sp. Mc24 [JSFH]
58051
58126
+
Phe
GAA
[ENA]
¡û
>W1710643437
JSFI01000005
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
53011
52936
-
Phe
GAA
[ENA]
¡û
>W1710643517
JSFJ01000017
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
49465
49540
+
Phe
GAA
[ENA]
¡û
>W1710733936
LGEV01000031
Thermotogota
Thermotoga sp. 50_64 [LGEV]
16504
16579
+
Phe
GAA
[ENA]
¡û
>W1710734180
LGFF01000184
Thermotogota
Pseudothermotoga lettingae [LGFF]
1178
1253
+
Phe
GAA
[ENA]
¡û
>W1710734250
LGFH01000031
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
306
231
-
Phe
GAA
[ENA]
¡û
>W1710734361
LGFM01000060
Thermotogota
Thermotoga sp. 47_83 [LGFM]
462
537
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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