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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235940 (21 seq.)
>WENV181408912
OGCH01023033
[OGCH] hot springs metagenome; hot springs
83
158
+
Thr
TGT
[ENA]
¢þ
>C08010986
CP000812
Thermotogota
Pseudothermotoga lettingae TMO [CP000812]
497669
497744
+
Thr
TGT
[Ensembl]
¡û
>WENV170675705
LDZQ01000369
[LDZQ] terrestrial metagenome; oil reservoir sample I2
31903
31978
+
Thr
TGT
[ENA]
¢þ
>WENV170676040
LDZR01000622
[LDZR] terrestrial metagenome; oil reservoir sample K2
31515
31440
-
Thr
TGT
[ENA]
¢þ
>WENV170676453
LDZR01002693
[LDZR] terrestrial metagenome; oil reservoir sample K2
31903
31978
+
Thr
TGT
[ENA]
¢þ
>WENV170676952
LDZS01003368
[LDZS] terrestrial metagenome; oil reservoir sample K3
91
16
-
Thr
TGT
[ENA]
¢þ
>W141561640
JHYP01000004
Thermotogota
Pseudothermotoga elfii DSM 9442 [JHYP]
639204
639129
-
Thr
TGT
[ENA]
¡û
>W141778835
JONI01000004
Thermotogota
Pseudothermotoga hypogea DSM 11164 [JONI]
365049
364974
-
Thr
TGT
[ENA]
¡û
>C141000322
AP014507
Thermotogota
Pseudothermotoga elfii DSM 9442 = NBRC 107921 [AP014507]
490831
490906
+
Thr
TGT
-
¡û
>C141000377
AP014508
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [AP014508]
1785035
1785110
+
Thr
TGT
-
¡û
>C09106807
CP001634
Thermotogota
Kosmotoga olearia TBF 19.5.1 [CP001634]
1978333
1978258
-
Thr
TGT
[Ensembl]
¡û
>C151001666
AP014509
Thermotogota
Thermotoga caldifontis AZM44c09 [AP014509]
753928
753853
-
Thr
TGT
-
¡û
>C151001675
AP014510
Thermotogota
Thermotoga profunda AZM34c06 [AP014510]
392449
392524
+
Thr
TGT
-
¡û
>C11123137
CP002351
Thermotogota
Pseudothermotoga thermarum DSM 5069 [CP002351]
831579
831654
+
Thr
TGT
[Ensembl]
¡û
>C161005116
CP007141
Thermotogota
Pseudothermotoga hypogea DSM 11164 = NBRC 106472 [CP007141]
83334
83259
-
Thr
TGT
[Ensembl]
¡û
>W1610612507
LGEV01000002
Thermotogota
Thermotoga sp. 50_64 [LGEV]
31903
31978
+
Thr
TGT
[ENA]
¡û
>W1610612860
LGFF01000001
Thermotogota
Pseudothermotoga lettingae [LGFF]
31515
31440
-
Thr
TGT
[ENA]
¡û
>W1610612958
LGFH01000017
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
31903
31978
+
Thr
TGT
[ENA]
¡û
>W1710733905
LGEV01000002
Thermotogota
Thermotoga sp. 50_64 [LGEV]
31903
31978
+
Thr
TGT
[ENA]
¡û
>W1710734142
LGFF01000001
Thermotogota
Pseudothermotoga lettingae [LGFF]
31515
31440
-
Thr
TGT
[ENA]
¡û
>W1710734240
LGFH01000017
Thermotogota
Thermotoga sp. 50_1627 [LGFH]
31903
31978
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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