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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235999 (49 seq.)
>W1711074674
LSJT01000048
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
238
165
-
Gly
GCC
[ENA]
¡û
>W1711138023
LVCF01000038
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
255074
255147
+
Gly
GCC
[ENA]
¡û
>W1711138025
LVCF01000038
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
255324
255397
+
Gly
GCC
[ENA]
¡û
>W1711312327
MAST01000053
Actinomycetota
Humibacillus sp. DSM 29435 [MAST]
67840
67913
+
Gly
GCC
[ENA]
¡û
>W1711492034
MKKB01000222
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
34253
34328
+
Gly
GCC
[ENA]
¡û
>W1711492037
MKKB01000222
Actinomycetota
Kytococcus sp. CUA-901 [MKKB]
34591
34666
+
Gly
GCC
[ENA]
¡û
>W1711664224
MQVT01000001
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
128425
128498
+
Gly
GCC
[ENA]
¡û
>W1711664227
MQVT01000001
Actinomycetota
Dermacoccus nishinomiyaensis [MQVT]
130993
131068
+
Gly
GCC
[ENA]
¡û
>W1711664276
MQVU01000001
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
411379
411306
-
Gly
GCC
[ENA]
¡û
>W1711664279
MQVU01000001
Actinomycetota
Dermacoccus nishinomiyaensis [MQVU]
408800
408725
-
Gly
GCC
[ENA]
¡û
>W131161634
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
318645
318572
-
Gly
GCC
[ENA]
¡û
>W131161636
AQXW01000004
Actinomycetota
Demetria terragena DSM 11295 [AQXW]
318362
318289
-
Gly
GCC
[ENA]
¡û
>W131227550
AUFG01000004
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
165173
165246
+
Gly
GCC
[ENA]
¡û
>W131227553
AUFG01000004
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
169507
169582
+
Gly
GCC
[ENA]
¡û
>WENV183092651
OLLI01000495
[OLLI] soil metagenome; soil
4584
4657
+
Gly
GCC
[ENA]
¢þ
>WENV183749018
PPFU01108525
[PPFU] hypolithon metagenome; Antarctic Hypolithon
264
191
-
Gly
GCC
[ENA]
¢þ
>WENV170998153
MWWI01025922
[MWWI] soil metagenome; FI-1 sample; Antarctic (ecotone) soil
226
153
-
Gly
GCC
[ENA]
¢þ
>W09109318
ABUD01000012
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
84547
84472
-
Gly
GCC
[ENA]
¡û
>W09109321
ABUD01000012
Actinomycetota
Kytococcus sedentarius DSM 20547 [ABUD]
84208
84133
-
Gly
GCC
[ENA]
¡û
>W1911752293
QWLM01000006
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
78218
78145
-
Gly
GCC
[ENA]
¡û
>W1911752296
QWLM01000006
Actinomycetota
Dermacoccus abyssi MT1.1 [QWLM]
77372
77297
-
Gly
GCC
[ENA]
¡û
>W1810189346
PKIZ01000001
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
10852
10779
-
Gly
GCC
[ENA]
¡û
>W1810189349
PKIZ01000001
Actinomycetota
Kytococcus schroeteri UMB1298 [PKIZ]
10524
10449
-
Gly
GCC
[ENA]
¡û
>W1810594911
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
1047396
1047471
+
Gly
GCC
[ENA]
¡û
>W1810594913
QGDN01000001
Actinomycetota
Branchiibius hedensis DSM 22951 [QGDN]
1047645
1047718
+
Gly
GCC
[ENA]
¡û
>W1810861669
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
2489709
2489636
-
Gly
GCC
[ENA]
¡û
>W1810861672
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
2487866
2487793
-
Gly
GCC
[ENA]
¡û
>C151039188
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
1427552
1427625
+
Gly
GCC
[Ensembl]
¡û
>C151039191
CP008889
Actinomycetota
Dermacoccus nishinomiyaensis M25 [CP008889]
1429304
1429379
+
Gly
GCC
[Ensembl]
¡û
>C151077115
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3121149
3121222
+
Gly
GCC
-
¡û
>C151077117
CP011112
Actinomycetota
Luteipulveratus mongoliensis MN07-A0370 [CP011112]
3126571
3126644
+
Gly
GCC
-
¡û
>C151090455
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2523016
2523091
+
Gly
GCC
-
¡û
>C151090458
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2527488
2527561
+
Gly
GCC
-
¡û
>C10108051
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1589064
1589139
+
Gly
GCC
[Ensembl]
¡û
>C10108054
CP001686
Actinomycetota
Kytococcus sedentarius DSM 20547 [CP001686]
1589403
1589478
+
Gly
GCC
[Ensembl]
¡û
>W11138439
AEIQ01000052
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
15040
14967
-
Gly
GCC
[ENA]
¡û
>W11138442
AEIQ01000052
Actinomycetota
Dermacoccus sp. Ellin185 [AEIQ]
12477
12402
-
Gly
GCC
[ENA]
¡û
>W1511568126
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
1666804
1666731
-
Gly
GCC
[ENA]
¡û
>W1511568128
LAIR01000002
Actinomycetota
Luteipulveratus halotolerans C296001 [LAIR]
1666348
1666275
-
Gly
GCC
[ENA]
¡û
>W1511629602
LDCM01000002
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
412536
412609
+
Gly
GCC
[ENA]
¡û
>W1511629605
LDCM01000002
Actinomycetota
Dermacoccus sp. PE3 [LDCM]
413382
413457
+
Gly
GCC
[ENA]
¡û
>W11155931
AFAQ01000968
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
3070
2995
-
Gly
GCC
[ENA]
¡û
>W11156005
AFAQ01002082
Actinomycetota
Rhodococcus sp. R04 [AFAQ]
74
1
-
Gly
GCC
[ENA]
¡û
>W1610095224
CYUL01000003
Actinomycetota
Actinobaculum massiliense [CYUL]
41179
41106
-
Gly
GCC
[ENA]
¡û
>W1610913979
LSJT01000048
Actinomycetota
Dermacoccus sp. CCH2-D9 [LSJT]
238
165
-
Gly
GCC
[ENA]
¡û
>W1610949109
LVCF01000038
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
255074
255147
+
Gly
GCC
[ENA]
¡û
>W1610949111
LVCF01000038
Actinomycetota
Branchiibius sp. NY16-3462-2 [LVCF]
255324
255397
+
Gly
GCC
[ENA]
¡û
>W1710610287
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
281685
281758
+
Gly
GCC
[ENA]
¡û
>W1710610290
FYEZ01000001
Actinomycetota
Kytococcus aerolatus [FYEZ]
282018
282093
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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