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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236005 (25 seq.)
>C025729
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
156596
156671
+
Val
TAC
[Ensembl]
¡û
>C191179228
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
157799
157871
+
Val
TAC
-
¡û
>C151004477
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
157792
157867
+
Val
TAC
[Ensembl]
¡û
>C10113578
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
157813
157888
+
Val
TAC
[Ensembl]
¡û
>C10113622
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
157789
157864
+
Val
TAC
[Ensembl]
¡û
>C11122888
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
155160
155232
+
Val
TAC
[Ensembl]
¡û
>C121002396
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
157432
157507
+
Val
TAC
[Ensembl]
¡û
>C121002441
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
157733
157808
+
Val
TAC
[Ensembl]
¡û
>C121002486
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
157737
157812
+
Val
TAC
[Ensembl]
¡û
>C121006091
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
157744
157819
+
Val
TAC
[Ensembl]
¡û
>C161017249
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
157715
157790
+
Val
TAC
[Ensembl]
¡û
>C161028014
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
157812
157887
+
Val
TAC
-
¡û
>C161028058
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
157811
157886
+
Val
TAC
-
¡û
>C161028102
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
156609
156684
+
Val
TAC
-
¡û
>C161028146
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
157749
157824
+
Val
TAC
-
¡û
>C161028190
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
157799
157874
+
Val
TAC
-
¡û
>C161028234
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
157808
157883
+
Val
TAC
-
¡û
>C161028279
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
157797
157872
+
Val
TAC
-
¡û
>C161028323
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
157797
157872
+
Val
TAC
-
¡û
>C161028367
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
157793
157868
+
Val
TAC
-
¡û
>C161084174
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
21197
21272
+
Val
TAC
-
¡û
>C131001853
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
157798
157873
+
Val
TAC
[Ensembl]
¡û
>C131009484
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
157737
157812
+
Val
TAC
[Ensembl]
¡û
>C131011345
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
157747
157822
+
Val
TAC
-
¡û
>C131011389
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
157797
157872
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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