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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236032 (62 seq.)
>W1710777872
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
921258
921333
+
Phe
GAA
[ENA]
¡û
>W1710777925
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
812941
813016
+
Phe
GAA
[ENA]
¡û
>W1710892065
LNDJ01000085
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
46296
46221
-
Phe
GAA
[ENA]
¡û
>W1710915860
LNUO01000183
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
27123
27198
+
Phe
GAA
[ENA]
¡û
>W1711227868
LXWA01000030
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
25427
25352
-
Phe
GAA
[ENA]
¡û
>W1711682945
MRYB01000004
Gammaproteobacteria
Psychrobacter sp. Rd 27.2 [MRYB]
31556
31631
+
Phe
GAA
[ENA]
¡û
>C171131079
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
3246327
3246402
+
Phe
GAA
-
¡û
>C015821
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2621213
2621288
+
Phe
GAA
[Ensembl]
¡û
>C015983
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
3019385
3019460
+
Phe
GAA
[Ensembl]
¡û
>WENV180101036
OAOU01000018
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
35106
35031
-
Phe
GAA
[ENA]
¢þ
>WENV180101124
OAOU01000950
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
72
-1
-
Phe
GAA
[ENA]
¢þ
>WENV180101444
OAOU01062268
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
72
-1
-
Phe
GAA
[ENA]
¢þ
>w003226
AADI01000004
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
233484
233412
-
Phe
GAA
[ENA]
¡û
>W141086163
AUSW01000013
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
33157
33232
+
Phe
GAA
[ENA]
¡û
>W141199962
AYXM01000073
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
64931
64856
-
Phe
GAA
[ENA]
¡û
>W141200520
AYXZ01000111
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
7943
8018
+
Phe
GAA
[ENA]
¡û
>W141200575
AYYA01000051
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
7943
8018
+
Phe
GAA
[ENA]
¡û
>C08007218
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
2621213
2621288
+
Phe
GAA
[Ensembl]
¡û
>W141234100
BAWJ01000010
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
33993
34068
+
Phe
GAA
[ENA]
¡û
>WENV182549340
OJBY01000324
[OJBY] seawater metagenome; Sea water
1886
1811
-
Phe
GAA
[ENA]
¢þ
>WENV182577132
OJGC01013331
[OJGC] seawater metagenome; Sea water
217
142
-
Phe
GAA
[ENA]
¢þ
>WENV183704528
PDWI01000334
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
36838
36763
-
Phe
GAA
[ENA]
¢þ
>WENV170014656
AYSL01003032
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
3110
3035
-
Phe
GAA
[ENA]
¢þ
>WENV170014772
AYSL01010477
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
877
952
+
Phe
GAA
[ENA]
¢þ
>WENV170291548
CESA01140499
[CESA] marine metagenome genome assembly TARA_078_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
561
636
+
Phe
GAA
[ENA]
¢þ
>WENV170539615
CEWR01269108
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
890
965
+
Phe
GAA
[ENA]
¢þ
>WENV170579650
FUFK010040262
[FUFK] metagenome; unknown
6124
6049
-
Phe
GAA
[ENA]
¢þ
>WENV170581452
FUFK010063480
[FUFK] metagenome; unknown
4983
5058
+
Phe
GAA
[ENA]
¢þ
>WENV170581576
FUFK010065012
[FUFK] metagenome; unknown
25970
25895
-
Phe
GAA
[ENA]
¢þ
>WENV170590412
FUFK010719017
[FUFK] metagenome; unknown
1811
1886
+
Phe
GAA
[ENA]
¢þ
>WENV170590701
FUFK010731718
[FUFK] metagenome; unknown
1901
1976
+
Phe
GAA
[ENA]
¢þ
>WENV170823521
MDSY01059115
[MDSY] marine metagenome; seawater
2278
2353
+
Phe
GAA
[ENA]
¢þ
>C181056033
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
1722931
1723006
+
Phe
GAA
-
¡û
>W09103329
AAJC01000020
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
41211
41136
-
Phe
GAA
[ENA]
¡û
>W1910377605
FUKN01000014
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
37194
37269
+
Phe
GAA
[ENA]
¡û
>W1910891621
NEXR01000001
Gammaproteobacteria
Psychrobacter sp. L7 [NEXR]
31365
31440
+
Phe
GAA
[ENA]
¡û
>W1910891780
NEXU01000075
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
6277
6202
-
Phe
GAA
[ENA]
¡û
>W1911203646
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1748579
1748504
-
Phe
GAA
[ENA]
¡û
>W1911534857
OLML01000001
Gammaproteobacteria
Psychrobacter sp. Marseille-P5312 [OLML]
1069093
1069168
+
Phe
GAA
[ENA]
¡û
>W1810155462
PJAS01000056
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
32199
32274
+
Phe
GAA
[ENA]
¡û
>W1810156177
PJBD01000020
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
7807
7732
-
Phe
GAA
[ENA]
¡û
>W1810156421
PJBH01000050
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
30695
30770
+
Phe
GAA
[ENA]
¡û
>W1810157376
PJBX01000158
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
52059
51984
-
Phe
GAA
[ENA]
¡û
>W1810157435
PJBY01000102
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
35958
36033
+
Phe
GAA
[ENA]
¡û
>W1810596417
QGGM01000015
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
33589
33664
+
Phe
GAA
[ENA]
¡û
>W1810671412
QJSU01000001
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
654275
654200
-
Phe
GAA
[ENA]
¡û
>W1810692670
QLKS01000003
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
584940
584865
-
Phe
GAA
[ENA]
¡û
>C151097220
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
1454840
1454915
+
Phe
GAA
-
¡û
>C161042746
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
3274512
3274587
+
Phe
GAA
-
¡û
>C161042794
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
3377239
3377314
+
Phe
GAA
[Ensembl]
¡û
>C161079272
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
3289910
3289985
+
Phe
GAA
[Ensembl]
¡û
>W121043498
AHVZ01000009
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
76813
76738
-
Phe
GAA
[ENA]
¡û
>W1610112385
CZJV02000071
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
7344
7269
-
Phe
GAA
[ENA]
¡û
>C131017393
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
3037938
3038013
+
Phe
GAA
[Ensembl]
¡û
>W1610632752
LIQB01000010
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
108109
108034
-
Phe
GAA
[ENA]
¡û
>W1610642058
LJCE01000002
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
921258
921333
+
Phe
GAA
[ENA]
¡û
>W1610642111
LJCF01000003
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
812941
813016
+
Phe
GAA
[ENA]
¡û
>W1610752331
LNDJ01000085
Gammaproteobacteria
Psychrobacter piscatorii [LNDJ]
46296
46221
-
Phe
GAA
[ENA]
¡û
>W1610774099
LNUO01000183
Gammaproteobacteria
Psychrobacter sp. ENNN9_III [LNUO]
27123
27198
+
Phe
GAA
[ENA]
¡û
>W1611011832
LXWA01000030
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
25427
25352
-
Phe
GAA
[ENA]
¡û
>W1710115089
CZJV02000071
Gammaproteobacteria
Psychrobacter cibarius [CZJV]
7344
7269
-
Phe
GAA
[ENA]
¡û
>W1710767184
LIQB01000010
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
108109
108034
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK