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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236111 (25 seq.)
>W1710892895
LNEF01000537
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
2140
2065
-
Lys
TTT
[ENA]
¡û
>C014745
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
1898153
1898228
+
Lys
TTT
[Ensembl]
¡û
>C014805
CP000450
Betaproteobacteria
Nitrosomonas eutropha C91 [CP000450]
972392
972317
-
Lys
TTT
[Ensembl]
¡û
>w002409
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
1898155
1898230
+
Lys
TTT
[ENA]
¡û
>WENV170556439
CXWL01008666
[CXWL] groundwater metagenome; biofilm material
7934
7859
-
Lys
TTT
[ENA]
¢þ
>WENV170713975
LNFM01049000
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2135
2060
-
Lys
TTT
[ENA]
¢þ
>W09103404
AAJE01000017
Betaproteobacteria
Nitrosomonas eutropha C71 [AAJE]
5173
5098
-
Lys
TTT
[ENA]
¡û
>W09133586
ACPG01000042
Betaproteobacteria
Nitrosomonas sp. AL212 [ACPG]
22411
22486
+
Lys
TTT
[ENA]
¡û
>W1810463559
PZZQ01000012
Betaproteobacteria
Nitrosomonas eutropha Nm19 [PZZQ]
42839
42914
+
Lys
TTT
[ENA]
¡û
>W1810628637
QICQ01000005
Betaproteobacteria
Nitrosomonas eutropha Nm 57 [QICQ]
37867
37942
+
Lys
TTT
[ENA]
¡û
>C11115621
CP002552
Betaproteobacteria
Nitrosomonas sp. AL212 [CP002552]
1716433
1716508
+
Lys
TTT
[Ensembl]
¡û
>C11115663
CP002876
Betaproteobacteria
Nitrosomonas sp. Is79A3 [CP002876]
1907532
1907607
+
Lys
TTT
[Ensembl]
¡û
>C161055583
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
2448477
2448402
-
Lys
TTT
[Ensembl]
¡û
>W1610574706
JZQZ01000291
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
5739
5814
+
Lys
TTT
[ENA]
¡û
>W1610753161
LNEF01000537
Betaproteobacteria
Nitrosomonadales bacterium Ga0074132 [LNEF]
2140
2065
-
Lys
TTT
[ENA]
¡û
>W1710505692
FMTW01000012
Betaproteobacteria
Nitrosomonas eutropha [FMTW]
43236
43161
-
Lys
TTT
[ENA]
¡û
>W1710527953
FNLN01000017
Betaproteobacteria
Nitrosomonas ureae [FNLN]
465
390
-
Lys
TTT
[ENA]
¡û
>W1710528778
FNNM01000009
Betaproteobacteria
Nitrosomonas eutropha [FNNM]
42790
42865
+
Lys
TTT
[ENA]
¡û
>W1710529379
FNNX01000039
Betaproteobacteria
Nitrosomonas europaea [FNNX]
3941
3866
-
Lys
TTT
[ENA]
¡û
>W1710538905
FNUX01000006
Betaproteobacteria
Nitrosomonas ureae [FNUX]
146945
147020
+
Lys
TTT
[ENA]
¡û
>W1710541284
FNYF01000007
Betaproteobacteria
Nitrosomonas eutropha [FNYF]
40443
40518
+
Lys
TTT
[ENA]
¡û
>W1710554054
FOID01000038
Betaproteobacteria
Nitrosomonas europaea [FOID]
21419
21494
+
Lys
TTT
[ENA]
¡û
>W1710578262
FPBL01000003
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
118062
118137
+
Lys
TTT
[ENA]
¡û
>W1710600415
FUWK01000039
Betaproteobacteria
Nitrosomonas europaea [FUWK]
21364
21439
+
Lys
TTT
[ENA]
¡û
>W1710691941
JZQZ01000291
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
5739
5814
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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