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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236166 (39 seq.)
>WENV181408272
OGCH01001313
[OGCH] hot springs metagenome; hot springs
5216
5143
-
Ala
CGC
[ENA]
¢þ
>W1511638142
LDNR01000005
Unclassified
bacterium JGI-5 [LDNR] JGI-5 [LDNR]
6748
6821
+
Ala
CGC
[ENA]
¡û
>W1610122507
CZVJ01000042
Unclassified
Candidatus Kryptonium thompsoni JGI-12 [CZVJ]
8072
8145
+
Ala
CGC
[ENA]
¡û
>W1610122573
CZVL01000009
Unclassified
Candidatus Kryptonium thompsoni JGI-7 [CZVL]
68604
68531
-
Ala
CGC
[ENA]
¡û
>W1610122614
CZVM01000015
Unclassified
Candidatus Kryptonium thompsoni JGI-15 [CZVM]
10291
10218
-
Ala
CGC
[ENA]
¡û
>W1610122642
CZVN01000009
Unclassified
Candidatus Kryptonium thompsoni JGI-13 [CZVN]
10789
10716
-
Ala
CGC
[ENA]
¡û
>W1610122696
CZVO01000060
Unclassified
Candidatus Kryptonium thompsoni JGI-10 [CZVO]
567
640
+
Ala
CGC
[ENA]
¡û
>W1610122701
CZVP01000002
Unclassified
Candidatus Kryptonium thompsoni JGI-14 [CZVP]
53640
53713
+
Ala
CGC
[ENA]
¡û
>W1610122770
CZVR01000054
Unclassified
Candidatus Kryptobacter tengchongensis JGI-22 [CZVR]
195
268
+
Ala
CGC
[ENA]
¡û
>W1610122800
CZVS01000055
Unclassified
Candidatus Kryptonium thompsoni JGI-5 [CZVS]
6748
6821
+
Ala
CGC
[ENA]
¡û
>W1610122825
CZVU01000002
Unclassified
Candidatus Kryptobacter tengchongensis JGI-24 [CZVU]
14939
15012
+
Ala
CGC
[ENA]
¡û
>W1610122875
CZVV01000068
Unclassified
Candidatus Kryptobacter tengchongensis JGI-25 [CZVV]
7646
7719
+
Ala
CGC
[ENA]
¡û
>W1610122977
CZVY01000010
Unclassified
Candidatus Kryptonium thompsoni JGI-9 [CZVY]
16738
16665
-
Ala
CGC
[ENA]
¡û
>W1610163184
FAON01000007
Unclassified
Candidatus Kryptobacter tengchongensis JGI-3 [FAON]
100996
101069
+
Ala
CGC
[ENA]
¡û
>W1610163250
FAOO01000012
Unclassified
Candidatus Thermokryptus mobilis JGI-1 [FAOO]
67109
67182
+
Ala
CGC
[ENA]
¡û
>W1610163276
FAOP01000003
Unclassified
Candidatus Kryptonium thompsoni JGI-4 [FAOP]
186188
186115
-
Ala
CGC
[ENA]
¡û
>W1610594413
LDXU01000012
Unclassified
Candidatus Thermokryptus mobilis [LDXU]
67109
67182
+
Ala
CGC
[ENA]
¡û
>W1610594468
LDXW01000003
Unclassified
Candidatus Kryptobacter tengchongensis [LDXW]
100996
101069
+
Ala
CGC
[ENA]
¡û
>W1610594516
LDXX01000003
Unclassified
Candidatus Kryptonium thompsoni [LDXX]
186188
186115
-
Ala
CGC
[ENA]
¡û
>W1610594576
LDXY01000042
Unclassified
Candidatus Kryptonium thompsoni [LDXY]
8072
8145
+
Ala
CGC
[ENA]
¡û
>W1710124174
CZVJ01000042
Unclassified
Candidatus Kryptonium thompsoni JGI-12 [CZVJ]
8072
8145
+
Ala
CGC
[ENA]
¡û
>W1710124240
CZVL01000009
Unclassified
Candidatus Kryptonium thompsoni JGI-7 [CZVL]
68604
68531
-
Ala
CGC
[ENA]
¡û
>W1710124281
CZVM01000015
Unclassified
Candidatus Kryptonium thompsoni JGI-15 [CZVM]
10291
10218
-
Ala
CGC
[ENA]
¡û
>W1710124309
CZVN01000009
Unclassified
Candidatus Kryptonium thompsoni JGI-13 [CZVN]
10789
10716
-
Ala
CGC
[ENA]
¡û
>W1710124363
CZVO01000060
Unclassified
Candidatus Kryptonium thompsoni JGI-10 [CZVO]
567
640
+
Ala
CGC
[ENA]
¡û
>W1710124368
CZVP01000002
Unclassified
Candidatus Kryptonium thompsoni JGI-14 [CZVP]
53640
53713
+
Ala
CGC
[ENA]
¡û
>W1710124437
CZVR01000054
Unclassified
Candidatus Kryptobacter tengchongensis JGI-22 [CZVR]
195
268
+
Ala
CGC
[ENA]
¡û
>W1710124467
CZVS01000055
Unclassified
Candidatus Kryptonium thompsoni JGI-5 [CZVS]
6748
6821
+
Ala
CGC
[ENA]
¡û
>W1710124492
CZVU01000002
Unclassified
Candidatus Kryptobacter tengchongensis JGI-24 [CZVU]
14939
15012
+
Ala
CGC
[ENA]
¡û
>W1710124542
CZVV01000068
Unclassified
Candidatus Kryptobacter tengchongensis JGI-25 [CZVV]
7646
7719
+
Ala
CGC
[ENA]
¡û
>W1710124644
CZVY01000010
Unclassified
Candidatus Kryptonium thompsoni JGI-9 [CZVY]
16738
16665
-
Ala
CGC
[ENA]
¡û
>W1710164851
FAON01000007
Unclassified
Candidatus Kryptobacter tengchongensis JGI-3 [FAON]
100996
101069
+
Ala
CGC
[ENA]
¡û
>W1710164917
FAOO01000012
Unclassified
Candidatus Thermokryptus mobilis JGI-1 [FAOO]
67109
67182
+
Ala
CGC
[ENA]
¡û
>W1710164943
FAOP01000003
Unclassified
Candidatus Kryptonium thompsoni JGI-4 [FAOP]
186188
186115
-
Ala
CGC
[ENA]
¡û
>W1710515910
FNCE01000003
Alphaproteobacteria
Limimonas halophila [FNCE]
110306
110381
+
Ala
CGC
[ENA]
¡û
>W1710713865
LDXU01000012
Unclassified
Candidatus Thermokryptus mobilis [LDXU]
67109
67182
+
Ala
CGC
[ENA]
¡û
>W1710713920
LDXW01000003
Unclassified
Candidatus Kryptobacter tengchongensis [LDXW]
100996
101069
+
Ala
CGC
[ENA]
¡û
>W1710713968
LDXX01000003
Unclassified
Candidatus Kryptonium thompsoni [LDXX]
186188
186115
-
Ala
CGC
[ENA]
¡û
>W1710714028
LDXY01000042
Unclassified
Candidatus Kryptonium thompsoni [LDXY]
8072
8145
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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