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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236192 (40 seq.)
>W1710852862
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
339548
339624
+
His
GTG
[ENA]
¡û
>W1710852963
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
83422
83498
+
His
GTG
[ENA]
¡û
>W1710859363
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
349376
349452
+
His
GTG
[ENA]
¡û
>W1710859743
LMCI01000035
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
88670
88746
+
His
GTG
[ENA]
¡û
>W1710859826
LMCJ01000064
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
139983
139907
-
His
GTG
[ENA]
¡û
>W1711510411
MLAX01000001
Alphaproteobacteria
Alphaproteobacteria bacterium AO1-B [MLAX]
730703
730779
+
His
GTG
[ENA]
¡û
>C171097480
CP019630
Alphaproteobacteria
Roseibium aggregatum RMAR6-6 [CP019630]
1528406
1528330
-
His
GTG
-
¡û
>W141152648
AXBY01000045
Alphaproteobacteria
Labrenzia sp. C1B10 [AXBY]
638638
638562
-
His
GTG
[ENA]
¡û
>WENV170012971
ASRQ01000619
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1173
1097
-
His
GTG
[ENA]
¢þ
>WENV170013048
ASRR01000931
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
1026
1102
+
His
GTG
[ENA]
¢þ
>WENV170727940
LULE01004865
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
2110
2186
+
His
GTG
[ENA]
¢þ
>WENV170779776
LZQR01000559
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2195
2271
+
His
GTG
[ENA]
¢þ
>C181067712
CP022529
Alphaproteobacteria
Labrenzia sp. VG12 [CP022529]
5416543
5416619
+
His
GTG
-
¡û
>C191188408
CP041191
Alphaproteobacteria
Labrenzia sp. PHM005 [CP041191]
5984583
5984507
-
His
GTG
-
¡û
>W09112057
ABXL01000050
Alphaproteobacteria
Pseudovibrio sp. JE062 [ABXL]
116330
116254
-
His
GTG
[ENA]
¡û
>W1910285221
FREX01000011
Alphaproteobacteria
Pseudovibrio sp. Alg231-02 [FREX]
71312
71388
+
His
GTG
[ENA]
¡û
>W1911493230
OBEL01000001
Alphaproteobacteria
Cohaesibacter gelatinilyticus DSM 18289 [OBEL]
76306
76382
+
His
GTG
[ENA]
¡û
>W1911538946
OMPG01000002
Alphaproteobacteria
Pseudovibrio ascidiaceicola AU243 [OMPG]
60992
61068
+
His
GTG
[ENA]
¡û
>W1911701546
QNUM01000002
Alphaproteobacteria
Cohaesibacter haloalkalitolerans JC131 [QNUM]
582141
582065
-
His
GTG
[ENA]
¡û
>W1810725561
QODK01000007
Alphaproteobacteria
Cohaesibacter intestini YE-B6 [QODK]
15982
15906
-
His
GTG
[ENA]
¡û
>W11135840
AEFL01000004
Alphaproteobacteria
Roseibium sp. TrichSKD4 [AEFL]
771
847
+
His
GTG
[ENA]
¡û
>C121006661
CP003147
Alphaproteobacteria
Pseudovibrio sp. FO-BEG1 [CP003147]
1321810
1321886
+
His
GTG
[Ensembl]
¡û
>C161037935
CP011927
Alphaproteobacteria
Labrenzia sp. CP4 [CP011927]
5165958
5165882
-
His
GTG
-
¡û
>W1610042874
BAZK01000014
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
111709
111633
-
His
GTG
[ENA]
¡û
>W1610092206
CXWD01000002
Alphaproteobacteria
Roseibium alexandrii [CXWD]
48563
48487
-
His
GTG
[ENA]
¡û
>W1610540271
JSEP01000002
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
446508
446432
-
His
GTG
[ENA]
¡û
>W1610585618
LCWX01000216
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
104978
104902
-
His
GTG
[ENA]
¡û
>W1610716001
LLWC01000009
Alphaproteobacteria
Pseudovibrio hongkongensis [LLWC]
339548
339624
+
His
GTG
[ENA]
¡û
>W1610716102
LLWE01000030
Alphaproteobacteria
Pseudovibrio stylochi [LLWE]
83422
83498
+
His
GTG
[ENA]
¡û
>W1610721709
LMCC01000004
Alphaproteobacteria
Pseudovibrio sp. Ad13 [LMCC]
349376
349452
+
His
GTG
[ENA]
¡û
>W1610722089
LMCI01000035
Alphaproteobacteria
Pseudovibrio sp. W64 [LMCI]
88670
88746
+
His
GTG
[ENA]
¡û
>W1610722172
LMCJ01000064
Alphaproteobacteria
Pseudovibrio sp. W74 [LMCJ]
139983
139907
-
His
GTG
[ENA]
¡û
>W1710040034
BAZK01000014
Alphaproteobacteria
Pseudovibrio denitrificans JCM 12308 [BAZK]
111709
111633
-
His
GTG
[ENA]
¡û
>W1710095563
CXWD01000002
Alphaproteobacteria
Roseibium alexandrii [CXWD]
48563
48487
-
His
GTG
[ENA]
¡û
>W1710567021
FOSK01000004
Alphaproteobacteria
Pseudovibrio ascidiaceicola [FOSK]
113863
113787
-
His
GTG
[ENA]
¡û
>W1710577902
FPBD01000006
Alphaproteobacteria
Pseudovibrio denitrificans [FPBD]
111844
111768
-
His
GTG
[ENA]
¡û
>W1710591627
FRBW01000001
Alphaproteobacteria
Roseibium suaedae [FRBW]
594399
594475
+
His
GTG
[ENA]
¡û
>W1710643292
JSEP01000002
Alphaproteobacteria
Labrenzia sp. OB1 [JSEP]
446508
446432
-
His
GTG
[ENA]
¡û
>W1710660274
JXMT01000105
Alphaproteobacteria
Roseibium aggregatum aggregata [JXMT]
8629
8705
+
His
GTG
[ENA]
¡û
>W1710704809
LCWX01000216
Alphaproteobacteria
Pseudovibrio sp. POLY-S9 [LCWX]
104978
104902
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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