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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236222 (17 seq.)
>W1710776336
LIZN01000003
Actinomycetota
Thermobifida halotolerans [LIZN]
130807
130732
-
His
GTG
[ENA]
¡û
>W131002903
AGZR01000009
Actinomycetota
Propionimicrobium lymphophilum ACS-093-V-SCH5 [AGZR]
129090
129165
+
His
GTG
[ENA]
¡û
>W131230945
AUIB01000001
Actinomycetota
Propionimicrobium lymphophilum DSM 4903 [AUIB]
540382
540307
-
His
GTG
[ENA]
¡û
>W131098837
AOSG01000062
Actinomycetota
Thermobifida fusca TM51 [AOSG]
12790
12863
+
His
GTG
[ENA]
¡û
>C025599
CP000088
Actinomycetota
Thermobifida fusca YX [CP000088]
2673862
2673934
+
His
GTG
[Ensembl]
¡û
>w001908
AAAQ02000006
Actinomycetota
Thermobifida fusca [AAAQ]
100545
100468
-
His
GTG
[ENA]
¡û
>W141203576
AZIS01000003
Actinomycetota
Propionimicrobium sp. BV2F7 [AZIS]
15999
15924
-
His
GTG
[ENA]
¡û
>W1910568575
JEMR01000003
Actinomycetota
Thermobifida fusca GAFM-TF-ZOO [JEMR]
170530
170603
+
His
GTG
[ENA]
¡û
>W1910575970
JRUV01000240
Actinomycetota
Thermobifida halotolerans DSM 44931 [JRUV]
25486
25561
+
His
GTG
[ENA]
¡û
>W1911539610
ONLN01000333
Actinomycetota
Thermobifida fusca [ONLN]
885
958
+
His
GTG
[ENA]
¡û
>W1610051349
BBGT01000449
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
1599
1526
-
His
GTG
[ENA]
¡û
>W1610073733
BCWB01000039
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
71801
71728
-
His
GTG
[ENA]
¡û
>W1610612196
LGEM01000152
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
5500
5427
-
His
GTG
[ENA]
¡û
>W1610640442
LIZN01000003
Actinomycetota
Thermobifida halotolerans [LIZN]
130807
130732
-
His
GTG
[ENA]
¡û
>W1710047748
BBGT01000449
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BBGT]
1599
1526
-
His
GTG
[ENA]
¡û
>W1710070851
BCWB01000039
Actinomycetota
Thermobifida fusca NBRC 14071 = JCM 3263 [BCWB]
71801
71728
-
His
GTG
[ENA]
¡û
>W1710733702
LGEM01000152
Actinomycetota
Thermobifida cellulosilytica TB100 [LGEM]
5500
5427
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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