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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23642 (41 seq.)
>W1710906982
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
36497
36408
-
Ser
TGA
[ENA]
¡û
>W1710995924
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
226393
226482
+
Ser
TGA
[ENA]
¡û
>W1711710477
MSZN01000001
Betaproteobacteria
Alcaligenes faecalis [MSZN]
117615
117704
+
Ser
TGA
[ENA]
¡û
>W1711710533
MSZO01000002
Betaproteobacteria
Alcaligenes faecalis [MSZO]
274895
274806
-
Ser
TGA
[ENA]
¡û
>W1711710625
MSZP01000011
Betaproteobacteria
Alcaligenes faecalis [MSZP]
117444
117533
+
Ser
TGA
[ENA]
¡û
>W1711710666
MSZQ01000011
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
23099
23010
-
Ser
TGA
[ENA]
¡û
>W1711710715
MSZR01000013
Betaproteobacteria
Alcaligenes faecalis [MSZR]
23158
23069
-
Ser
TGA
[ENA]
¡û
>W1711711877
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
287943
287854
-
Ser
TGA
[ENA]
¡û
>W1711744369
MUHU01000050
Betaproteobacteria
Derxia lacustris [MUHU]
80291
80380
+
Ser
TGA
[ENA]
¡û
>C171115509
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
2797755
2797844
+
Ser
TGA
-
¡û
>W131051755
AMXV01000012
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
153058
153147
+
Ser
TGA
[ENA]
¡û
>W131223050
AUBT01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
370632
370721
+
Ser
TGA
[ENA]
¡û
>W141104415
AVOG02000012
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
122318
122407
+
Ser
TGA
[ENA]
¡û
>WENV181311554
OFJB01004294
[OFJB] sludge metagenome; sludge
1549
1460
-
Ser
TGA
[ENA]
¢þ
>W141169881
AXWS01000008
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
902177
902088
-
Ser
TGA
[ENA]
¡û
>W141237706
BBJQ01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
121691
121780
+
Ser
TGA
[ENA]
¡û
>WENV183733656
PJTY01009514
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
928
839
-
Ser
TGA
[ENA]
¢þ
>WENV170646014
JQGF01006587
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2547
2458
-
Ser
TGA
[ENA]
¢þ
>WENV170646030
JQGF01011307
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2787
2876
+
Ser
TGA
[ENA]
¢þ
>WENV170655258
JTFN01015440
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2130
2219
+
Ser
TGA
[ENA]
¢þ
>WENV170655493
JTFN01038317
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
409
498
+
Ser
TGA
[ENA]
¢þ
>WENV170656678
JTFO01032945
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1266
1177
-
Ser
TGA
[ENA]
¢þ
>WENV170656899
JTFO01057151
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
101
12
-
Ser
TGA
[ENA]
¢þ
>WENV170657130
JTFO01089630
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
286
197
-
Ser
TGA
[ENA]
¢þ
>WENV170657510
JTFO01172085
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
355
444
+
Ser
TGA
[ENA]
¢þ
>C181053228
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
2912848
2912937
+
Ser
TGA
-
¡û
>C181088586
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
2550216
2550305
+
Ser
TGA
-
¡û
>C191085265
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
3096433
3096522
+
Ser
TGA
-
¡û
>C191091137
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
1418906
1418995
+
Ser
TGA
-
¡û
>C191113953
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
3824880
3824969
+
Ser
TGA
-
¡û
>C191149623
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
709402
709491
+
Ser
TGA
-
¡û
>W1810583877
QEXO01000001
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
273728
273639
-
Ser
TGA
[ENA]
¡û
>W1511321042
JQCV01000007
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
186926
186837
-
Ser
TGA
[ENA]
¡û
>W1511537447
JZBR01000002
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
789297
789386
+
Ser
TGA
[ENA]
¡û
>C161051334
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
789297
789386
+
Ser
TGA
[Ensembl]
¡û
>W121091197
AKMR01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
122173
122262
+
Ser
TGA
[ENA]
¡û
>W1610093562
CYTB01000003
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
504
415
-
Ser
TGA
[ENA]
¡û
>W1610765996
LNOL01000016
Betaproteobacteria
Alcaligenes faecalis [LNOL]
36497
36408
-
Ser
TGA
[ENA]
¡û
>W1610850581
LQAS01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
226393
226482
+
Ser
TGA
[ENA]
¡û
>W1610921541
LSUO01000027
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
2311
2222
-
Ser
TGA
[ENA]
¡û
>W1710082540
BDHG01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
512
423
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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