This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236722 (46 seq.)
>C171033395
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4649886
4649810
-
Arg
ACG
-
¡û
>C171033397
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4649661
4649585
-
Arg
ACG
-
¡û
>C171033400
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4649193
4649117
-
Arg
ACG
-
¡û
>C171033402
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4648930
4648854
-
Arg
ACG
-
¡û
>C020928
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1415506
1415582
+
Arg
ACG
[Ensembl]
¡û
>C021955
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
1257246
1257322
+
Arg
ACG
[Ensembl]
¡û
>W08005674
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35754
35681
-
Arg
ACG
[ENA]
¡û
>W08005675
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35642
35569
-
Arg
ACG
[ENA]
¡û
>W08005676
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35529
35456
-
Arg
ACG
[ENA]
¡û
>W08005677
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35370
35297
-
Arg
ACG
[ENA]
¡û
>W08005678
ABIC01000011
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
35241
35168
-
Arg
ACG
[ENA]
¡û
>WENV170647192
JQIA01015403
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
3593
3666
+
Arg
ACG
[ENA]
¢þ
>C181204252
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2495494
2495418
-
Arg
ACG
-
¡û
>C181204253
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2495337
2495261
-
Arg
ACG
-
¡û
>C181204254
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2495212
2495136
-
Arg
ACG
-
¡û
>C181204255
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2495055
2494979
-
Arg
ACG
-
¡û
>C181204256
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2494954
2494878
-
Arg
ACG
-
¡û
>C191173200
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
3527788
3527864
+
Arg
ACG
-
¡û
>C191185878
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3398673
3398597
-
Arg
ACG
-
¡û
>W1910677506
MCUF01000078
Gammaproteobacteria
Shewanella sp. 10N.286.51.B7 [MCUF]
4588
4512
-
Arg
ACG
[ENA]
¡û
>W1810155928
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
90468
90544
+
Arg
ACG
[ENA]
¡û
>W1810155929
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
90577
90653
+
Arg
ACG
[ENA]
¡û
>W1810155930
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
90685
90761
+
Arg
ACG
[ENA]
¡û
>W1810155931
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
90795
90871
+
Arg
ACG
[ENA]
¡û
>W1810155932
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
90902
90978
+
Arg
ACG
[ENA]
¡û
>W1810155933
PJAZ01000054
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
91011
91087
+
Arg
ACG
[ENA]
¡û
>W1810156271
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2381136
2381060
-
Arg
ACG
[ENA]
¡û
>W1810156272
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2381027
2380951
-
Arg
ACG
[ENA]
¡û
>W1810156273
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2380919
2380843
-
Arg
ACG
[ENA]
¡û
>W1810156274
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2380809
2380733
-
Arg
ACG
[ENA]
¡û
>W1810156275
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2380702
2380626
-
Arg
ACG
[ENA]
¡û
>W1810156276
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
2380593
2380517
-
Arg
ACG
[ENA]
¡û
>W1810157743
PJCD01000002
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
172272
172196
-
Arg
ACG
[ENA]
¡û
>W1810157884
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
1971025
1970949
-
Arg
ACG
[ENA]
¡û
>W1810157885
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
1970921
1970845
-
Arg
ACG
[ENA]
¡û
>C10112887
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3582082
3582006
-
Arg
ACG
[Ensembl]
¡û
>C10112888
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3581971
3581895
-
Arg
ACG
[Ensembl]
¡û
>C10112889
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3581751
3581675
-
Arg
ACG
[Ensembl]
¡û
>C10112890
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3581591
3581515
-
Arg
ACG
[Ensembl]
¡û
>C10112892
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3581285
3581209
-
Arg
ACG
[Ensembl]
¡û
>C10112893
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3581174
3581098
-
Arg
ACG
[Ensembl]
¡û
>C10112894
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3580841
3580765
-
Arg
ACG
[Ensembl]
¡û
>C10112895
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3580681
3580605
-
Arg
ACG
[Ensembl]
¡û
>C10112897
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3580375
3580299
-
Arg
ACG
[Ensembl]
¡û
>C10112898
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3580043
3579967
-
Arg
ACG
[Ensembl]
¡û
>C10112899
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3579883
3579807
-
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK