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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23685 (85 seq.)
>W1710875342
LMOH01000028
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
231622
231711
+
Ser
CGA
[ENA]
¡û
>W1710989594
LPWA01000148
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6926
7015
+
Ser
CGA
[ENA]
¡û
>W131162094
AQYH01000007
Alphaproteobacteria
Kaistia granuli DSM 23481 [AQYH]
110388
110477
+
Ser
CGA
[ENA]
¡û
>W1711135131
LUYO01000142
Alphaproteobacteria
Rhodobacterales bacterium Alpha_02 [LUYO]
18521
18432
-
Ser
CGA
[ENA]
¡û
>W1711257266
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
82387
82298
-
Ser
CGA
[ENA]
¡û
>W1711257327
LYTP01000001
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
696351
696440
+
Ser
CGA
[ENA]
¡û
>W131229817
AUHB01000007
Alphaproteobacteria
Pleomorphomonas oryzae DSM 16300 [AUHB]
50234
50145
-
Ser
CGA
[ENA]
¡û
>W131230413
AUHO01000010
Alphaproteobacteria
Kaistia adipata DSM 17808 [AUHO]
109278
109367
+
Ser
CGA
[ENA]
¡û
>W1711353163
MDDT01000015
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
24169
24080
-
Ser
CGA
[ENA]
¡û
>W1711353216
MDDU01000007
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
8352
8263
-
Ser
CGA
[ENA]
¡û
>W131235082
AULH01000004
Alphaproteobacteria
Pleomorphomonas koreensis DSM 23070 [AULH]
204668
204757
+
Ser
CGA
[ENA]
¡û
>W1711354730
MDFL01000014
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
179256
179345
+
Ser
CGA
[ENA]
¡û
>W1711384689
MEDI01000129
Alphaproteobacteria
Kaistia sp. SCN 65-12 [MEDI]
4871
4960
+
Ser
CGA
[ENA]
¡û
>W1711385425
MEEE01000416
Alphaproteobacteria
Mesorhizobium sp. SCN 65-12 [MEEE]
18152
18063
-
Ser
CGA
[ENA]
¡û
>W131218157
ATXK01000011
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
90
1
-
Ser
CGA
[ENA]
¡û
>W131218160
ATXK01000023
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
6
95
+
Ser
CGA
[ENA]
¡û
>W131218163
ATXK01000037
Alphaproteobacteria
Aurantimonas coralicida DSM 14790 [ATXK]
6
95
+
Ser
CGA
[ENA]
¡û
>W1711505390
MKVL01000032
Alphaproteobacteria
Mesorhizobium sp. 65-26 [MKVL]
316542
316631
+
Ser
CGA
[ENA]
¡û
>W1711694770
MSIG01000028
Alphaproteobacteria
Mongoliimonas terrestris MIMtkB18 [MSIG]
30023
30112
+
Ser
CGA
[ENA]
¡û
>W131219405
ATYO01000006
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
297709
297798
+
Ser
CGA
[ENA]
¡û
>WENV180020368
FTCZ01002131
[FTCZ] metagenome; soil
2475
2564
+
Ser
CGA
[ENA]
¢þ
>WENV180032015
FTJU01008416
[FTJU] metagenome; soil
2270
2181
-
Ser
CGA
[ENA]
¢þ
>WENV181166957
OEIU01004874
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5096
5007
-
Ser
CGA
[ENA]
¢þ
>WENV181167050
OEIU01007266
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
296
385
+
Ser
CGA
[ENA]
¢þ
>WENV181308261
OFIS01001688
[OFIS] sludge metagenome; sludge
3288
3199
-
Ser
CGA
[ENA]
¢þ
>WENV181401921
OFTX01023184
[OFTX] sludge metagenome; sludge
325
236
-
Ser
CGA
[ENA]
¢þ
>WENV181402335
OFTY01000664
[OFTY] sludge metagenome; sludge
784
695
-
Ser
CGA
[ENA]
¢þ
>W141266701
CCMY01000206
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
16175
16264
+
Ser
CGA
[ENA]
¡û
>W141266731
CCMZ01000034
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
245402
245313
-
Ser
CGA
[ENA]
¡û
>W141266797
CCNA01000061
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
88004
87915
-
Ser
CGA
[ENA]
¡û
>W141266843
CCNB01000046
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
157471
157382
-
Ser
CGA
[ENA]
¡û
>W141266883
CCNC01000168
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
29877
29788
-
Ser
CGA
[ENA]
¡û
>W141266910
CCNE01000021
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
8982
8893
-
Ser
CGA
[ENA]
¡û
>WENV183732815
PJTX01017638
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
613
524
-
Ser
CGA
[ENA]
¢þ
>WENV170010479
APMI01018241
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
4363
4274
-
Ser
CGA
[ENA]
¢þ
>WENV170011274
APMI01053640
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1720
1809
+
Ser
CGA
[ENA]
¢þ
>WENV170011309
APMI01054944
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7346
7257
-
Ser
CGA
[ENA]
¢þ
>WENV170576408
FRDC01000560
[FRDC] freshwater metagenome; water
11257
11346
+
Ser
CGA
[ENA]
¢þ
>WENV170963654
MRWG01000441
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
50473
50384
-
Ser
CGA
[ENA]
¢þ
>C191000407
AP017626
Alphaproteobacteria
Pleomorphomonas sp. SM30 [AP017626]
3175663
3175574
-
Ser
CGA
-
¡û
>C191125555
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
4185751
4185662
-
Ser
CGA
-
¡û
>C191125576
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
2458796
2458885
+
Ser
CGA
-
¡û
>C191125639
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
5861020
5860931
-
Ser
CGA
-
¡û
>C191125707
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
2260816
2260727
-
Ser
CGA
-
¡û
>C191125762
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
1623948
1623859
-
Ser
CGA
-
¡û
>C191125807
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
3819791
3819702
-
Ser
CGA
-
¡û
>C191125852
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
4112247
4112158
-
Ser
CGA
-
¡û
>W141817306
JQKO01000022
Alphaproteobacteria
Methylocapsa aurea [JQKO]
29341
29252
-
Ser
CGA
[ENA]
¡û
>W1911189464
NQVN01000007
Alphaproteobacteria
Pleomorphomonas carboxyditropha SVCO-16 [NQVN]
43693
43604
-
Ser
CGA
[ENA]
¡û
>W1911242458
NSFT01000005
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
18855
18766
-
Ser
CGA
[ENA]
¡û
>W1911242686
NSFY01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
397631
397720
+
Ser
CGA
[ENA]
¡û
>W1911242734
NSFZ01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
576221
576132
-
Ser
CGA
[ENA]
¡û
>W1911242773
NSGA01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
600223
600312
+
Ser
CGA
[ENA]
¡û
>W1911242838
NSGB01000007
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
43998
43909
-
Ser
CGA
[ENA]
¡û
>W1911242877
NSGC01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
377212
377123
-
Ser
CGA
[ENA]
¡û
>W1911242937
NSGD01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
132182
132093
-
Ser
CGA
[ENA]
¡û
>W1911242985
NSGE01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
408905
408994
+
Ser
CGA
[ENA]
¡û
>W1911243022
NSGF01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
326003
325914
-
Ser
CGA
[ENA]
¡û
>W1911243084
NSGG01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
182122
182033
-
Ser
CGA
[ENA]
¡û
>W1911695538
QMBQ01000005
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
26037
26126
+
Ser
CGA
[ENA]
¡û
>W1911798340
QYRN01000005
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
396685
396774
+
Ser
CGA
[ENA]
¡û
>W1810173880
PJNW01000011
Alphaproteobacteria
Pleomorphomonas diazotrophica R5-392 [PJNW]
292034
292123
+
Ser
CGA
[ENA]
¡û
>W1810273175
PSNV01000009
Alphaproteobacteria
Kaistia algarum LYH11 [PSNV]
53362
53451
+
Ser
CGA
[ENA]
¡û
>W1810699018
QMBP01000015
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
94929
94840
-
Ser
CGA
[ENA]
¡û
>W11172479
AFSD01000003
Alphaproteobacteria
Agrobacterium tumefaciens F2 [AFSD]
294305
294216
-
Ser
CGA
[ENA]
¡û
>WENV061799
AACY023440866
Marine microbial communities from Global Ocean Sampling (GOS)
342
433
+
Ser
CGA
[ENA]
>W121084215
AKHX01000001
Alphaproteobacteria
Rhizobium leguminosarum bv. viciae USDA 2370 [AKHX]
104323
104412
+
Ser
CGA
[ENA]
¡û
>W1610056791
BBWN01000052
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
37468
37557
+
Ser
CGA
[ENA]
¡û
>W1610056792
BBWN01000052
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
47841
47930
+
Ser
CGA
[ENA]
¡û
>W1610083654
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
147386
147475
+
Ser
CGA
[ENA]
¡û
>W1610737688
LMOH01000028
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
231622
231711
+
Ser
CGA
[ENA]
¡û
>W1610844470
LPWA01000148
Alphaproteobacteria
Mesorhizobium loti [LPWA]
6926
7015
+
Ser
CGA
[ENA]
¡û
>W1610946251
LUYO01000142
Alphaproteobacteria
Rhodobacterales bacterium Alpha_02 [LUYO]
18521
18432
-
Ser
CGA
[ENA]
¡û
>W1611020242
LYTM01000045
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
82387
82298
-
Ser
CGA
[ENA]
¡û
>W1611020349
LYTP01000001
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
696351
696440
+
Ser
CGA
[ENA]
¡û
>W1710053490
BBWN01000052
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
37468
37557
+
Ser
CGA
[ENA]
¡û
>W1710053491
BBWN01000052
Alphaproteobacteria
Aurantimonas coralicida [BBWN]
47841
47930
+
Ser
CGA
[ENA]
¡û
>W1710088671
CCND01000002
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
147386
147475
+
Ser
CGA
[ENA]
¡û
>W1710519645
FNEW01000002
Alphaproteobacteria
Agrobacterium fabrum PDC82 [FNEW]
93520
93609
+
Ser
CGA
[ENA]
¡û
>W1710551389
FOGA01000005
Alphaproteobacteria
Agrobacterium fabrum NFIX01 [FOGA]
93609
93698
+
Ser
CGA
[ENA]
¡û
>W1710567184
FOSN01000009
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
101439
101528
+
Ser
CGA
[ENA]
¡û
>W1710569719
FOUQ01000004
Alphaproteobacteria
Pleomorphomonas diazotrophica [FOUQ]
292248
292337
+
Ser
CGA
[ENA]
¡û
>W1710571239
FOVT01000004
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
208678
208589
-
Ser
CGA
[ENA]
¡û
>W1710578111
FPBI01000001
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
155285
155196
-
Ser
CGA
[ENA]
¡û
>W1710583198
FQUP01000004
Alphaproteobacteria
Kaistia soli DSM 19436 [FQUP]
25904
25993
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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