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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236855 (10 seq.)
>WENV180099279
NKAJ01001269
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
2677
2752
+
Gly
CCC
[ENA]
¢þ
>WENV180099319
NKAJ01001664
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
702
627
-
Gly
CCC
[ENA]
¢þ
>WENV180099327
NKAJ01001784
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
6422
6497
+
Gly
CCC
[ENA]
¢þ
>WENV180099337
NKAJ01001923
[NKAJ] marine sediment metagenome; Jiulong cold seep at northern South China Sea
14668
14593
-
Gly
CCC
[ENA]
¢þ
>WENV170693283
LGVC01000975
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
1669
1594
-
Gly
CCC
[ENA]
¢þ
>WENV170698096
LGVF01258556
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1486
1411
-
Gly
CCC
[ENA]
¢þ
>SRA1033039
SRR035088.157687
454 Sequencing (SRP001809)
378
303
-
Gly
CCC
[SRA]
>SRA1034902
SRR035089.194356
454 Sequencing (SRP001810)
187
112
-
Gly
CCC
[SRA]
>SRA1038553
SRR035090.326315
454 Sequencing (SRP001811)
50
125
+
Gly
CCC
[SRA]
>SRA1039297
SRR035090.461035
454 Sequencing (SRP001811)
49
124
+
Gly
CCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK