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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237121 (56 seq.)
>W1711343466
MCIJ01000001
Actinomycetota
Pseudonocardia sp. Ae150A_Ps1 [MCIJ]
3843498
3843571
+
Lys
TTT
[ENA]
¡û
>W1711343518
MCIK01000001
Actinomycetota
Pseudonocardia sp. Ae168_Ps1 [MCIK]
3846532
3846605
+
Lys
TTT
[ENA]
¡û
>W1711343594
MCIL01000001
Actinomycetota
Pseudonocardia sp. Ae263_Ps1 [MCIL]
1625228
1625155
-
Lys
TTT
[ENA]
¡û
>W1711343618
MCIM01000001
Actinomycetota
Pseudonocardia sp. Ae331_Ps2 [MCIM]
2624932
2625005
+
Lys
TTT
[ENA]
¡û
>W1711343688
MCIN01000001
Actinomycetota
Pseudonocardia sp. Ae356_Ps1 [MCIN]
5484015
5484088
+
Lys
TTT
[ENA]
¡û
>W1711343765
MCIO01000001
Actinomycetota
Pseudonocardia sp. Ae406_Ps2 [MCIO]
3447804
3447731
-
Lys
TTT
[ENA]
¡û
>W1711343782
MCIP01000001
Actinomycetota
Pseudonocardia sp. Ae505_Ps2 [MCIP]
1985678
1985751
+
Lys
TTT
[ENA]
¡û
>W1711343873
MCIQ01000001
Actinomycetota
Pseudonocardia sp. Ae706_Ps2 [MCIQ]
3453608
3453535
-
Lys
TTT
[ENA]
¡û
>W1711343888
MCIR01000001
Actinomycetota
Pseudonocardia sp. Ae707_Ps1 [MCIR]
421578
421651
+
Lys
TTT
[ENA]
¡û
>W1711343936
MCIS01000001
Actinomycetota
Pseudonocardia sp. Ae717_Ps2 [MCIS]
110954
111027
+
Lys
TTT
[ENA]
¡û
>W1711386157
MEEZ01000082
Actinomycetota
Pseudonocardia sp. SCN 72-51 [MEEZ]
761
686
-
Lys
TTT
[ENA]
¡û
>W1711386180
MEFA01000003
Actinomycetota
Pseudonocardia sp. SCN 72-86 [MEFA]
82213
82138
-
Lys
TTT
[ENA]
¡û
>W1711387123
MEGH01000011
Actinomycetota
Pseudonocardia sp. SCN 73-27 [MEGH]
761
686
-
Lys
TTT
[ENA]
¡û
>W1711427783
MIFY01000011
Actinomycetota
Pseudonocardia autotrophica [MIFY]
281900
281973
+
Lys
TTT
[ENA]
¡û
>W1711427955
MIGB01000017
Actinomycetota
Pseudonocardia autotrophica [MIGB]
3386
3313
-
Lys
TTT
[ENA]
¡û
>W1711491763
MKJV01000105
Actinomycetota
Pseudonocardia sp. CNS-004 [MKJV]
58871
58796
-
Lys
TTT
[ENA]
¡û
>W1711505768
MKVV01000024
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
87596
87669
+
Lys
TTT
[ENA]
¡û
>W1711724908
MTQO01000053
Actinomycetota
Actinosynnema sp. ALI-1.44 [MTQO]
630684
630611
-
Lys
TTT
[ENA]
¡û
>W131222185
AUBB01000019
Actinomycetota
Pseudonocardia spinosispora DSM 44797 [AUBB]
5806
5879
+
Lys
TTT
[ENA]
¡û
>W131231278
AUII01000023
Actinomycetota
Pseudonocardia asaccharolytica DSM 44247 [AUII]
75249
75324
+
Lys
TTT
[ENA]
¡û
>WENV180291683
OBIV01135956
[OBIV] soil metagenome; Clay
237
311
+
Lys
TTT
[ENA]
¢þ
>WENV180291984
OBIV01254543
[OBIV] soil metagenome; Clay
229
155
-
Lys
TTT
[ENA]
¢þ
>w004010
AAEF02000097
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
12681
12756
+
Lys
TTT
[ENA]
¡û
>WENV181168133
OEIU01175701
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
54
129
+
Lys
TTT
[ENA]
¢þ
>C08005734
CP000750
Actinomycetota
Kineococcus radiotolerans SRS30216 = ATCC BAA-149 [CP000750]
1446646
1446571
-
Lys
TTT
[Ensembl]
¡û
>WENV183748949
PPFU01101097
[PPFU] hypolithon metagenome; Antarctic Hypolithon
238
165
-
Lys
TTT
[ENA]
¢þ
>C191005719
AP018920
Actinomycetota
Pseudonocardia autotrophica NBRC 12743 [AP018920]
549669
549742
+
Lys
TTT
-
¡û
>W141757787
JNYD01000020
Actinomycetota
Pseudonocardia autotrophica [JNYD]
82913
82988
+
Lys
TTT
[ENA]
¡û
>W141758239
JNYM01000301
Actinomycetota
Kibdelosporangium aridum subsp. largum [JNYM]
18761
18834
+
Lys
TTT
[ENA]
¡û
>W141760437
JOAA01000019
Actinomycetota
Rhodococcus rhodnii [JOAA]
246912
246985
+
Lys
TTT
[ENA]
¡û
>W141765837
JODP01000006
Actinomycetota
Kineosporia aurantiaca JCM 3230 [JODP]
448827
448902
+
Lys
TTT
[ENA]
¡û
>W141775194
JOJN01000003
Actinomycetota
Nocardioides aequoreus [JOJN]
472799
472724
-
Lys
TTT
[ENA]
¡û
>W1910038410
BEGX01000032
Actinomycetota
Pseudonocardia sp. N23 [BEGX]
4797
4723
-
Lys
TTT
[ENA]
¡û
>W1910182907
BJNG01000052
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
4862
4936
+
Lys
TTT
[ENA]
¡û
>W1910182952
BJNH01000088
Actinomycetota
Pseudonocardia saturnea NBRC 14499 [BJNH]
3386
3313
-
Lys
TTT
[ENA]
¡û
>W1910994826
NKYF01000001
Actinomycetota
Pseudonocardia sp. MH-G8 [NKYF]
1460047
1459973
-
Lys
TTT
[ENA]
¡û
>W1911679499
QHKI01000017
Actinomycetota
Kibdelosporangium aridum A82846 [QHKI]
104556
104483
-
Lys
TTT
[ENA]
¡û
>W1911765383
QXCQ01000018
Actinomycetota
Nakamurella silvestris DSM 102309 [QXCQ]
230923
230850
-
Lys
TTT
[ENA]
¡û
>W1810121462
PHUJ01000003
Actinomycetota
Pseudonocardia alni DSM 44104 [PHUJ]
3781787
3781860
+
Lys
TTT
[ENA]
¡û
>W1810176381
PJPW02000014
Actinomycetota
Pseudonocardia dioxanivorans BERK-1 [PJPW]
27617
27544
-
Lys
TTT
[ENA]
¡û
>W1810368117
PVZF01000008
Actinomycetota
Kineococcus rhizosphaerae DSM 19711 [PVZF]
271358
271285
-
Lys
TTT
[ENA]
¡û
>C151075005
CP010989
Actinomycetota
Pseudonocardia sp. EC080625-04 [CP010989]
5184897
5184824
-
Lys
TTT
-
¡û
>C151087145
CP011862
Actinomycetota
Pseudonocardia sp. AL041005-10 [CP011862]
3999152
3999225
+
Lys
TTT
-
¡û
>C151087201
CP011868
Actinomycetota
Pseudonocardia sp. HH130629-09 [CP011868]
4915292
4915217
-
Lys
TTT
-
¡û
>W1510073596
CDME01000001
Actinomycetota
Kibdelosporangium sp. MJ126-NF4 [CDME]
12029
12104
+
Lys
TTT
[ENA]
¡û
>W10118414
ADUJ01000792
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
3360
3433
+
Lys
TTT
[ENA]
¡û
>W10128137
AEGE01000859
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
4159
4086
-
Lys
TTT
[ENA]
¡û
>C11117102
CP002593
Actinomycetota
Pseudonocardia dioxanivorans CB1190 [CP002593]
522786
522711
-
Lys
TTT
[Ensembl]
¡û
>W11123489
ADUJ01000792
Actinomycetota
Pseudonocardia sp. P1 [ADUJ]
3360
3433
+
Lys
TTT
[ENA]
¡û
>W11136836
AEGE01000859
Actinomycetota
Pseudonocardia sp. P2 [AEGE]
4159
4086
-
Lys
TTT
[ENA]
¡û
>C161040364
CP012181
Actinomycetota
Pseudonocardia sp. EC080610-09 [CP012181]
674638
674565
-
Lys
TTT
-
¡û
>C161040412
CP012184
Actinomycetota
Pseudonocardia sp. EC080619-01 [CP012184]
2379609
2379536
-
Lys
TTT
[Ensembl]
¡û
>C161045523
CP012752
Actinomycetota
Kibdelosporangium phytohabitans KLBMP1111 [CP012752]
11382959
11383032
+
Lys
TTT
[Ensembl]
¡û
>W1710514736
FNBE01000012
Actinomycetota
Pseudonocardia oroxyli [FNBE]
27956
27883
-
Lys
TTT
[ENA]
¡û
>W1710589960
FRAP01000006
Actinomycetota
Pseudonocardia thermophila [FRAP]
26573
26498
-
Lys
TTT
[ENA]
¡û
>W1710606445
FWXV01000002
Actinomycetota
Kibdelosporangium aridum [FWXV]
990203
990276
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK