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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237132 (97 seq.)
>W1710989954
LPWU01000122
Alphaproteobacteria
Acetobacter pasteurianus [LPWU]
9616
9542
-
Thr
CGT
[ENA]
¡û
>W1711143107
LVHD01000002
Alphaproteobacteria
Acetobacter malorum [LVHD]
64132
64207
+
Thr
CGT
[ENA]
¡û
>W1711143158
LVHD01000104
Alphaproteobacteria
Acetobacter malorum [LVHD]
1773
1698
-
Thr
CGT
[ENA]
¡û
>W1711257948
LYUD01000102
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
4192
4266
+
Thr
CGT
[ENA]
¡û
>C171033008
CP014687
Alphaproteobacteria
Acetobacter persici TMW2.1084 [CP014687]
2135915
2135840
-
Thr
CGT
-
¡û
>C171036162
CP015164
Alphaproteobacteria
Acetobacter ascendens LMG 1590 [CP015164]
2778606
2778532
-
Thr
CGT
-
¡û
>C171036240
CP015168
Alphaproteobacteria
Acetobacter ascendens LMG 1591 [CP015168]
979856
979782
-
Thr
CGT
-
¡û
>C171120256
CP021509
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101342 [CP021509]
985849
985923
+
Thr
CGT
-
¡û
>C171120351
CP021524
Alphaproteobacteria
Acetobacter ascendens SRCM101447 [CP021524]
1505055
1504981
-
Thr
CGT
-
¡û
>C171126450
CP021922
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus SRCM101468 [CP021922]
1610241
1610167
-
Thr
CGT
-
¡û
>W141224575
BAIN01000055
Alphaproteobacteria
Acetobacter papayae JCM 25143 [BAIN]
10115
10040
-
Thr
CGT
[ENA]
¡û
>W141226183
BAJW01000001
Alphaproteobacteria
Acetobacter persici JCM 25330 [BAJW]
62475
62400
-
Thr
CGT
[ENA]
¡û
>W141428616
JEOA01000007
Alphaproteobacteria
Acetobacter aceti 1023 [JEOA]
97172
97098
-
Thr
CGT
[ENA]
¡û
>WENV170669380
LAHS01000063
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
178322
178397
+
Thr
CGT
[ENA]
¢þ
>C181063309
CP022374
Alphaproteobacteria
Acetobacter oryzifermentans dm [CP022374]
2852652
2852726
+
Thr
CGT
-
¡û
>C181071394
CP022699
Alphaproteobacteria
Acetobacter tropicalis BDGP1 [CP022699]
1360559
1360484
-
Thr
CGT
-
¡û
>C181077180
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
261464
261390
-
Thr
CGT
-
¡û
>C181088320
CP023657
Alphaproteobacteria
Acetobacter pomorum BDGP5 [CP023657]
1785860
1785786
-
Thr
CGT
-
¡û
>C181193642
CP030871
Alphaproteobacteria
Acetobacter sp. JWB [CP030871]
2529652
2529726
+
Thr
CGT
-
¡û
>W141775530
JOJU01000005
Alphaproteobacteria
Acetobacter malorum [JOJU]
64102
64177
+
Thr
CGT
[ENA]
¡û
>W1910007937
BDER01000069
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471 [BDER]
4140
4214
+
Thr
CGT
[ENA]
¡û
>W1910007983
BDES01000065
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3188 [BDES]
52144
52218
+
Thr
CGT
[ENA]
¡û
>W1910008043
BDET01000084
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3222 [BDET]
19599
19673
+
Thr
CGT
[ENA]
¡û
>W1910008088
BDEU01000086
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3277 [BDEU]
52026
52100
+
Thr
CGT
[ENA]
¡û
>W1910008142
BDEV01000093
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3278 [BDEV]
52026
52100
+
Thr
CGT
[ENA]
¡û
>W1910008200
BDEW01000084
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3279 [BDEW]
52098
52172
+
Thr
CGT
[ENA]
¡û
>W1910008247
BDEX01000090
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3280 [BDEX]
52026
52100
+
Thr
CGT
[ENA]
¡û
>W1910008306
BDEY01000088
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
52098
52172
+
Thr
CGT
[ENA]
¡û
>W1910008353
BDEZ01000051
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3299 [BDEZ]
52121
52195
+
Thr
CGT
[ENA]
¡û
>W1910182335
BJMU01000011
Alphaproteobacteria
Acetobacter orleanensis NBRC 13752 [BJMU]
55497
55572
+
Thr
CGT
[ENA]
¡û
>W1910182369
BJMV01000005
Alphaproteobacteria
Acetobacter peroxydans NBRC 13755 [BJMV]
180664
180739
+
Thr
CGT
[ENA]
¡û
>C141012358
HF677570
Alphaproteobacteria
Acetobacter pasteurianus 386B [HF677570]
1332428
1332502
+
Thr
CGT
[Ensembl]
¡û
>W1910657445
MAPU01000006
Alphaproteobacteria
Acetobacter pasteurianus BCRC 14118 [MAPU]
51985
52059
+
Thr
CGT
[ENA]
¡û
>W1910753227
MKHC01000014
Alphaproteobacteria
Acetobacter pasteurianus BCRC14145 [MKHC]
72349
72275
-
Thr
CGT
[ENA]
¡û
>W1911410440
NWTP01000005
Alphaproteobacteria
Acetobacter orleanensis CCM 3610 [NWTP]
128058
127983
-
Thr
CGT
[ENA]
¡û
>W1810069683
PEBQ01000030
Alphaproteobacteria
Acetobacter pomorum LHT 2458 [PEBQ]
65893
65819
-
Thr
CGT
[ENA]
¡û
>C151091067
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
588347
588421
+
Thr
CGT
[Ensembl]
¡û
>W1510011592
BBMU01000263
Alphaproteobacteria
Acetobacter tropicalis NBRC 16470 [BBMU]
15904
15829
-
Thr
CGT
[ENA]
¡û
>C10100657
AP011163
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01-42C [AP011163]
2574384
2574458
+
Thr
CGT
[Ensembl]
¡û
>C10100711
AP011121
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-01 [AP011121]
2666638
2666712
+
Thr
CGT
[Ensembl]
¡û
>C10100768
AP011128
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-03 [AP011128]
2666430
2666504
+
Thr
CGT
[Ensembl]
¡û
>C10100825
AP011135
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-07 [AP011135]
2665187
2665261
+
Thr
CGT
[Ensembl]
¡û
>C10100882
AP011170
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-12 [AP011170]
2663767
2663841
+
Thr
CGT
[Ensembl]
¡û
>C10100939
AP011142
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-22 [AP011142]
2666410
2666484
+
Thr
CGT
[Ensembl]
¡û
>C10100996
AP011149
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-26 [AP011149]
2666452
2666526
+
Thr
CGT
[Ensembl]
¡û
>C10101053
AP011156
Alphaproteobacteria
Acetobacter pasteurianus IFO 3283-32 [AP011156]
2663785
2663859
+
Thr
CGT
[Ensembl]
¡û
>W1511271144
JOKL01000056
Alphaproteobacteria
Acetobacter pomorum DmCS_004 [JOKL]
52080
52154
+
Thr
CGT
[ENA]
¡û
>W1511271194
JOKM01000088
Alphaproteobacteria
Acetobacter tropicalis DmCS_006 [JOKM]
89753
89828
+
Thr
CGT
[ENA]
¡û
>W11149308
AEUP01000005
Alphaproteobacteria
Acetobacter pomorum DM001 [AEUP]
52000
52074
+
Thr
CGT
[ENA]
¡û
>W11184382
BABS01000069
Alphaproteobacteria
Acetobacter tropicalis NBRC 101654 [BABS]
14412
14337
-
Thr
CGT
[ENA]
¡û
>C161001896
AP014881
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [AP014881]
2674452
2674526
+
Thr
CGT
-
¡û
>C161031444
CP011120
Alphaproteobacteria
Acetobacter oryzifermentans SLV-7 [CP011120]
2578557
2578631
+
Thr
CGT
[Ensembl]
¡û
>C161105496
LN606600
Alphaproteobacteria
Acetobacter senegalensis 108B [LN606600]
1098206
1098281
+
Thr
CGT
[Ensembl]
¡û
>W121122969
BACF01000012
Alphaproteobacteria
Acetobacter pasteurianus NBRC 101655 [BACF]
9616
9542
-
Thr
CGT
[ENA]
¡û
>W121123006
BACG01000010
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [BACG]
72401
72327
-
Thr
CGT
[ENA]
¡û
>W121126848
CADO01000003
Alphaproteobacteria
Acetobacter pasteurianus subsp. pasteurianus LMG 1262 [CADO]
4110
4184
+
Thr
CGT
[ENA]
¡û
>W121126902
CADQ01000016
Alphaproteobacteria
Acetobacter pasteurianus 3P3 [CADQ]
52033
52107
+
Thr
CGT
[ENA]
¡û
>W1610040731
BAMV01000005
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
57414
57489
+
Thr
CGT
[ENA]
¡û
>W1610040798
BAMW01000030
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
172494
172419
-
Thr
CGT
[ENA]
¡û
>W1610040866
BAMY01000009
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
14810
14735
-
Thr
CGT
[ENA]
¡û
>W1610623959
LHZA01000141
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
674
599
-
Thr
CGT
[ENA]
¡û
>W1610624078
LHZC01000047
Alphaproteobacteria
Acetobacter malorum [LHZC]
65783
65708
-
Thr
CGT
[ENA]
¡û
>W1610624221
LHZF01000161
Alphaproteobacteria
Acetobacter malorum [LHZF]
698
623
-
Thr
CGT
[ENA]
¡û
>W1610624707
LHZQ01000181
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
24040
24115
+
Thr
CGT
[ENA]
¡û
>W1610624862
LHZT01000122
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
71396
71471
+
Thr
CGT
[ENA]
¡û
>W1610624903
LHZU01000131
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
49561
49636
+
Thr
CGT
[ENA]
¡û
>W1610624955
LHZV01000064
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
128350
128275
-
Thr
CGT
[ENA]
¡û
>W1610625049
LHZX01000316
Alphaproteobacteria
Acetobacter malorum [LHZX]
34341
34266
-
Thr
CGT
[ENA]
¡û
>W1610625064
LHZY01000003
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
100928
100853
-
Thr
CGT
[ENA]
¡û
>W1610625105
LHZZ01000229
Alphaproteobacteria
Acetobacter malorum [LHZZ]
993
918
-
Thr
CGT
[ENA]
¡û
>W1610625189
LIAA01000060
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
22492
22567
+
Thr
CGT
[ENA]
¡û
>W1610954115
LVHD01000002
Alphaproteobacteria
Acetobacter malorum [LVHD]
64132
64207
+
Thr
CGT
[ENA]
¡û
>W1610954166
LVHD01000104
Alphaproteobacteria
Acetobacter malorum [LVHD]
1773
1698
-
Thr
CGT
[ENA]
¡û
>W1611020420
LYUD01000102
Alphaproteobacteria
Acetobacter pasteurianus [LYUD]
4192
4266
+
Thr
CGT
[ENA]
¡û
>W1710037929
BAMV01000005
Alphaproteobacteria
Acetobacter cibinongensis 4H-1 [BAMV]
57414
57489
+
Thr
CGT
[ENA]
¡û
>W1710037996
BAMW01000030
Alphaproteobacteria
Acetobacter indonesiensis 5H-1 [BAMW]
172494
172419
-
Thr
CGT
[ENA]
¡û
>W1710038064
BAMY01000009
Alphaproteobacteria
Acetobacter orleanensis JCM 7639 [BAMY]
14810
14735
-
Thr
CGT
[ENA]
¡û
>W1710624248
JOMM01000011
Alphaproteobacteria
Acetobacter tropicalis [JOMM]
16860
16785
-
Thr
CGT
[ENA]
¡û
>W1710624299
JOMN01000009
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
72322
72247
-
Thr
CGT
[ENA]
¡û
>W1710624406
JOMP01000030
Alphaproteobacteria
Acetobacter indonesiensis [JOMP]
57977
58052
+
Thr
CGT
[ENA]
¡û
>W1710624441
JOMQ01000046
Alphaproteobacteria
Acetobacter cibinongensis DsW_47 [JOMQ]
27085
27010
-
Thr
CGT
[ENA]
¡û
>W1710624516
JOOZ01000058
Alphaproteobacteria
Acetobacter senegalensis [JOOZ]
16829
16754
-
Thr
CGT
[ENA]
¡û
>W1710624546
JOPA01000012
Alphaproteobacteria
Acetobacter indonesiensis [JOPA]
57950
58025
+
Thr
CGT
[ENA]
¡û
>W1710624655
JOPC01000043
Alphaproteobacteria
Acetobacter persici [JOPC]
59811
59886
+
Thr
CGT
[ENA]
¡û
>W1710624763
JOPG01000010
Alphaproteobacteria
Acetobacter malorum [JOPG]
58185
58260
+
Thr
CGT
[ENA]
¡û
>W1710624857
JOPI01000050
Alphaproteobacteria
Acetobacter sp. DsW_059 [JOPI]
37153
37078
-
Thr
CGT
[ENA]
¡û
>W1710755077
LHZA01000141
Alphaproteobacteria
Acetobacter cerevisiae [LHZA]
674
599
-
Thr
CGT
[ENA]
¡û
>W1710755196
LHZC01000047
Alphaproteobacteria
Acetobacter malorum [LHZC]
65783
65708
-
Thr
CGT
[ENA]
¡û
>W1710755339
LHZF01000161
Alphaproteobacteria
Acetobacter malorum [LHZF]
698
623
-
Thr
CGT
[ENA]
¡û
>W1710755825
LHZQ01000181
Alphaproteobacteria
Acetobacter tropicalis [LHZQ]
24040
24115
+
Thr
CGT
[ENA]
¡û
>W1710755980
LHZT01000122
Alphaproteobacteria
Acetobacter tropicalis [LHZT]
71396
71471
+
Thr
CGT
[ENA]
¡û
>W1710756021
LHZU01000131
Alphaproteobacteria
Acetobacter senegalensis [LHZU]
49561
49636
+
Thr
CGT
[ENA]
¡û
>W1710756073
LHZV01000064
Alphaproteobacteria
Acetobacter orleanensis [LHZV]
128350
128275
-
Thr
CGT
[ENA]
¡û
>W1710756167
LHZX01000316
Alphaproteobacteria
Acetobacter malorum [LHZX]
34341
34266
-
Thr
CGT
[ENA]
¡û
>W1710756182
LHZY01000003
Alphaproteobacteria
Acetobacter cerevisiae [LHZY]
100928
100853
-
Thr
CGT
[ENA]
¡û
>W1710756223
LHZZ01000229
Alphaproteobacteria
Acetobacter malorum [LHZZ]
993
918
-
Thr
CGT
[ENA]
¡û
>W1710756307
LIAA01000060
Alphaproteobacteria
Acetobacter cerevisiae [LIAA]
22492
22567
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK