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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237154 (112 seq.)
>W1711129195
LUTU01000013
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
120731
120806
+
Glu
CTC
[ENA]
¡û
>W1711143211
LVHE01000013
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
39116
39041
-
Glu
CTC
[ENA]
¡û
>W1711503694
MKTV01000053
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
56735
56810
+
Glu
CTC
[ENA]
¡û
>C171032906
CP014674
Alphaproteobacteria
Kozakia baliensis DSM 14400 [CP014674]
1246404
1246329
-
Glu
CTC
-
¡û
>C171032930
CP014681
Alphaproteobacteria
Kozakia baliensis NBRC 16680 [CP014681]
1387996
1388071
+
Glu
CTC
-
¡û
>C171033030
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
2065395
2065470
+
Glu
CTC
-
¡û
>C171033130
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
404511
404436
-
Glu
CTC
-
¡û
>C171033181
CP014692
Alphaproteobacteria
Acetobacter aceti TMW2.1153 [CP014692]
249843
249768
-
Glu
CTC
-
¡û
>C171074540
CP018190
Alphaproteobacteria
Granulibacter bethesdensis NIH5.1 [CP018190]
980097
980172
+
Glu
CTC
-
¡û
>C171074592
CP018191
Alphaproteobacteria
Granulibacter bethesdensis NIH9.1 [CP018191]
988678
988753
+
Glu
CTC
-
¡û
>C171074644
CP018192
Alphaproteobacteria
Granulibacter bethesdensis NIH6.1 [CP018192]
988628
988703
+
Glu
CTC
-
¡û
>C171074696
CP018193
Alphaproteobacteria
Granulibacter bethesdensis NIH7.1 [CP018193]
985183
985258
+
Glu
CTC
-
¡û
>C171074748
CP018194
Alphaproteobacteria
Granulibacter bethesdensis NIH8.1 [CP018194]
988679
988754
+
Glu
CTC
-
¡û
>C171074800
CP018195
Alphaproteobacteria
Granulibacter bethesdensis NIH1.4 [CP018195]
980157
980232
+
Glu
CTC
-
¡û
>W131164869
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
1196153
1196228
+
Glu
CTC
[ENA]
¡û
>W131222512
AUBI01000003
Alphaproteobacteria
Acetobacter nitrogenifigens DSM 23921 [AUBI]
649
574
-
Glu
CTC
[ENA]
¡û
>W131225105
AUDH01000039
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
5840
5765
-
Glu
CTC
[ENA]
¡û
>W131240814
BAON01000022
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
54222
54297
+
Glu
CTC
[ENA]
¡û
>W131241382
BARL01000002
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
310217
310292
+
Glu
CTC
[ENA]
¡û
>C009822
CP000394
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH1 [CP000394]
980151
980226
+
Glu
CTC
[Ensembl]
¡û
>C010037
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
507988
508063
+
Glu
CTC
[Ensembl]
¡û
>WENV180018071
FSYC01000215
[FSYC] metagenome; soil
548
473
-
Glu
CTC
[ENA]
¢þ
>W08009498
ABPH01000003
Alphaproteobacteria
Gluconacetobacter diazotrophicus PAl 5 [ABPH]
120759
120687
-
Glu
CTC
[ENA]
¡û
>WENV181191224
OEPS010041648
[OEPS] soil metagenome; soil
105
30
-
Glu
CTC
[ENA]
¢þ
>W141195227
AYTY01000008
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
9792
9717
-
Glu
CTC
[ENA]
¡û
>W141200340
AYXS01000001
Alphaproteobacteria
Asaia sp. SF2.1 [AYXS]
85042
84967
-
Glu
CTC
[ENA]
¡û
>W141226052
BAJT01000002
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
30081
30006
-
Glu
CTC
[ENA]
¡û
>W141226161
BAJV01000007
Alphaproteobacteria
Asaia prunellae JCM 25354 [BAJV]
81859
81784
-
Glu
CTC
[ENA]
¡û
>W141227278
BAKW01000022
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
41510
41585
+
Glu
CTC
[ENA]
¡û
>W141229921
BASM01000008
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
54226
54301
+
Glu
CTC
[ENA]
¡û
>W141247935
CBLX010000009
Alphaproteobacteria
Asaia bogorensis SF2.1 [CBLX]
481038
481113
+
Glu
CTC
[ENA]
¡û
>C08005279
AM889285
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5 [AM889285]
1044558
1044486
-
Glu
CTC
[Ensembl]
¡û
>C181221185
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
507997
508072
+
Glu
CTC
-
¡û
>C191157852
CP038143
Alphaproteobacteria
Oecophyllibacter saccharovorans Ha5 [CP038143]
540059
540134
+
Glu
CTC
-
¡û
>C191158442
CP038231
Alphaproteobacteria
Formicincola oecophyllae F3b2 [CP038231]
504677
504602
-
Glu
CTC
-
¡û
>W141702915
JMLV01000001
Alphaproteobacteria
Fodinicurvata fenggangensis DSM 21160 [JMLV]
70041
70116
+
Glu
CTC
[ENA]
¡û
>W141726090
JNAB01000015
Alphaproteobacteria
Kozakia baliensis [JNAB]
2992
2917
-
Glu
CTC
[ENA]
¡û
>W1910006519
BAGS01000004
Alphaproteobacteria
Acetobacter aceti NRIC 0242 [BAGS]
238120
238195
+
Glu
CTC
[ENA]
¡û
>W1910181408
BJLY01000004
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
123576
123501
-
Glu
CTC
[ENA]
¡û
>W1910181806
BJMI01000044
Alphaproteobacteria
Gluconacetobacter liquefaciens NBRC 12388 [BJMI]
603
528
-
Glu
CTC
[ENA]
¡û
>W1910181873
BJMK01000010
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
57705
57780
+
Glu
CTC
[ENA]
¡û
>W1910183180
BJNM01000014
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
3410
3335
-
Glu
CTC
[ENA]
¡û
>C09106317
CP001189
Alphaproteobacteria
Gluconacetobacter diazotrophicus PA1 5 PAl 5; ATCC 49037 [CP001189]
2752224
2752149
-
Glu
CTC
[Ensembl]
¡û
>W1911597831
PNQZ01000047
Alphaproteobacteria
Asaia sp. W19 [PNQZ]
82254
82329
+
Glu
CTC
[ENA]
¡û
>W1810000598
BEWL01000002
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
208088
208013
-
Glu
CTC
[ENA]
¡û
>W1810000675
BEWM01000005
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
75534
75459
-
Glu
CTC
[ENA]
¡û
>W1810000721
BEWN01000005
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
271044
271119
+
Glu
CTC
[ENA]
¡û
>W1810000763
BEWO01000015
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
12913
12838
-
Glu
CTC
[ENA]
¡û
>W1810000794
BEWP01000004
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
273317
273392
+
Glu
CTC
[ENA]
¡û
>W1810062037
PDNU01000003
Alphaproteobacteria
Pseudoroseomonas rhizosphaerae YW11 [PDNU]
110815
110890
+
Glu
CTC
[ENA]
¡û
>W1810605132
QGNA01000002
Alphaproteobacteria
Falsiroseomonas bella CQN31 [QGNA]
530055
530130
+
Glu
CTC
[ENA]
¡û
>W1810692337
QLIX01000010
Alphaproteobacteria
Roseicella frigidaeris DB-1506 [QLIX]
34472
34397
-
Glu
CTC
[ENA]
¡û
>W1810763169
QQAW01000020
Alphaproteobacteria
Gluconacetobacter liquefaciens DSM 5603 [QQAW]
698
623
-
Glu
CTC
[ENA]
¡û
>C151004012
CP003181
Alphaproteobacteria
Granulibacter bethesdensis NIH3.1 [CP003181]
1013603
1013678
+
Glu
CTC
[Ensembl]
¡û
>C151004087
CP003182
Alphaproteobacteria
Granulibacter bethesdensis CGDNIH4 [CP003182]
2459595
2459520
-
Glu
CTC
[Ensembl]
¡û
>C151004139
CP003183
Alphaproteobacteria
Granulibacter bethesdensis NIH2.1 [CP003183]
2480287
2480212
-
Glu
CTC
[Ensembl]
¡û
>C151006175
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
528439
528514
+
Glu
CTC
[Ensembl]
¡û
>W1511352884
JROR01000009
Alphaproteobacteria
Belnapia sp. F-4-1 [JROR]
165916
165841
-
Glu
CTC
[ENA]
¡û
>W1511620469
LCTG01000004
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
29857
29782
-
Glu
CTC
[ENA]
¡û
>C161001085
AP014690
Alphaproteobacteria
Asaia bogorensis NBRC 16594 [AP014690]
1542262
1542337
+
Glu
CTC
[Ensembl]
¡û
>C161096017
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
3575734
3575809
+
Glu
CTC
-
¡û
>W121016339
AGQV01000010
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
212555
212630
+
Glu
CTC
[ENA]
¡û
>W121034270
AHKI01000035
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
174113
174188
+
Glu
CTC
[ENA]
¡û
>W121123414
BADZ01000003
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
266430
266505
+
Glu
CTC
[ENA]
¡û
>W1610040649
BALE01000007
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
35060
35135
+
Glu
CTC
[ENA]
¡û
>W1610040694
BAMU01000006
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
54584
54509
-
Glu
CTC
[ENA]
¡û
>W1610041186
BANG01000021
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
279676
279751
+
Glu
CTC
[ENA]
¡û
>W1610041230
BANH01000057
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
1698
1623
-
Glu
CTC
[ENA]
¡û
>C131009973
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
1908454
1908379
-
Glu
CTC
[Ensembl]
¡û
>W1610624005
LHZB01000113
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
864
789
-
Glu
CTC
[ENA]
¡û
>W1610624146
LHZD01000021
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
255041
255116
+
Glu
CTC
[ENA]
¡û
>W1610624171
LHZE01000077
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
23466
23391
-
Glu
CTC
[ENA]
¡û
>W1610624263
LHZG01000162
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
28106
28181
+
Glu
CTC
[ENA]
¡û
>W1610624330
LHZH01000133
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
120609
120684
+
Glu
CTC
[ENA]
¡û
>W1610624338
LHZI01001000
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
192
117
-
Glu
CTC
[ENA]
¡û
>W1610624371
LHZI01001693
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
6924
6849
-
Glu
CTC
[ENA]
¡û
>W1610624398
LHZJ01000076
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
88994
89069
+
Glu
CTC
[ENA]
¡û
>W1610624437
LHZK01000108
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
300
225
-
Glu
CTC
[ENA]
¡û
>W1610624507
LHZL01000166
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
61878
61953
+
Glu
CTC
[ENA]
¡û
>W1610624548
LHZM01000087
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
147832
147907
+
Glu
CTC
[ENA]
¡û
>W1610624578
LHZN01000125
Alphaproteobacteria
Gluconobacter albidus [LHZN]
247
322
+
Glu
CTC
[ENA]
¡û
>W1610624638
LHZO01000062
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
12790
12715
-
Glu
CTC
[ENA]
¡û
>W1610624675
LHZP01000027
Alphaproteobacteria
Gluconobacter roseus [LHZP]
261129
261204
+
Glu
CTC
[ENA]
¡û
>W1610624785
LHZR01000113
Alphaproteobacteria
Gluconobacter albidus [LHZR]
57959
57884
-
Glu
CTC
[ENA]
¡û
>W1610624801
LHZS01000087
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
3104
3029
-
Glu
CTC
[ENA]
¡û
>W1610624998
LHZW01000053
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
52914
52839
-
Glu
CTC
[ENA]
¡û
>W1610940268
LUTU01000013
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
120731
120806
+
Glu
CTC
[ENA]
¡û
>W1610954219
LVHE01000013
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
39116
39041
-
Glu
CTC
[ENA]
¡û
>W1710037847
BALE01000007
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
35060
35135
+
Glu
CTC
[ENA]
¡û
>W1710037892
BAMU01000006
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BAMU]
54584
54509
-
Glu
CTC
[ENA]
¡û
>W1710038384
BANG01000021
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
279676
279751
+
Glu
CTC
[ENA]
¡û
>W1710038428
BANH01000057
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
1698
1623
-
Glu
CTC
[ENA]
¡û
>W1710624710
JOPF01000002
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
210614
210539
-
Glu
CTC
[ENA]
¡û
>W1710624788
JOPH01000001
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
32006
31931
-
Glu
CTC
[ENA]
¡û
>W1710624960
JOPL01000044
Alphaproteobacteria
Acetobacter sp. DsW_063 [JOPL]
2067
1992
-
Glu
CTC
[ENA]
¡û
>W1710755123
LHZB01000113
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
864
789
-
Glu
CTC
[ENA]
¡û
>W1710755264
LHZD01000021
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
255041
255116
+
Glu
CTC
[ENA]
¡û
>W1710755289
LHZE01000077
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
23466
23391
-
Glu
CTC
[ENA]
¡û
>W1710755381
LHZG01000162
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
28106
28181
+
Glu
CTC
[ENA]
¡û
>W1710755448
LHZH01000133
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
120609
120684
+
Glu
CTC
[ENA]
¡û
>W1710755456
LHZI01001000
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
192
117
-
Glu
CTC
[ENA]
¡û
>W1710755489
LHZI01001693
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
6924
6849
-
Glu
CTC
[ENA]
¡û
>W1710755516
LHZJ01000076
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
88994
89069
+
Glu
CTC
[ENA]
¡û
>W1710755555
LHZK01000108
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
300
225
-
Glu
CTC
[ENA]
¡û
>W1710755625
LHZL01000166
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
61878
61953
+
Glu
CTC
[ENA]
¡û
>W1710755666
LHZM01000087
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
147832
147907
+
Glu
CTC
[ENA]
¡û
>W1710755696
LHZN01000125
Alphaproteobacteria
Gluconobacter albidus [LHZN]
247
322
+
Glu
CTC
[ENA]
¡û
>W1710755756
LHZO01000062
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
12790
12715
-
Glu
CTC
[ENA]
¡û
>W1710755793
LHZP01000027
Alphaproteobacteria
Gluconobacter roseus [LHZP]
261129
261204
+
Glu
CTC
[ENA]
¡û
>W1710755903
LHZR01000113
Alphaproteobacteria
Gluconobacter albidus [LHZR]
57959
57884
-
Glu
CTC
[ENA]
¡û
>W1710755919
LHZS01000087
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
3104
3029
-
Glu
CTC
[ENA]
¡û
>W1710756116
LHZW01000053
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
52914
52839
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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