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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237161 (89 seq.)
>W1711018549
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
65577
65504
-
Ala
TGC
[ENA]
¡û
>W1711079614
LSOE01000011
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
135822
135895
+
Ala
TGC
[ENA]
¡û
>W1711357163
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
1125855
1125928
+
Ala
TGC
[ENA]
¡û
>W1711357203
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
11379
11452
+
Ala
TGC
[ENA]
¡û
>W1711357259
MDHD01000128
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
34693
34766
+
Ala
TGC
[ENA]
¡û
>W1711357308
MDHE01000257
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
34827
34900
+
Ala
TGC
[ENA]
¡û
>W1711357347
MDHF01000036
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
11320
11393
+
Ala
TGC
[ENA]
¡û
>W1711357391
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1659950
1660023
+
Ala
TGC
[ENA]
¡û
>W1711357428
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
971397
971470
+
Ala
TGC
[ENA]
¡û
>W1711357508
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
533666
533739
+
Ala
TGC
[ENA]
¡û
>W1711357517
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
11487
11560
+
Ala
TGC
[ENA]
¡û
>W1711357593
MDHK01000066
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
79162
79235
+
Ala
TGC
[ENA]
¡û
>W1711357607
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
11379
11452
+
Ala
TGC
[ENA]
¡û
>W1711357652
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
11378
11451
+
Ala
TGC
[ENA]
¡û
>W1711360714
MDJW01000009
Actinomycetota
Clavibacter michiganensis [MDJW]
66292
66219
-
Ala
TGC
[ENA]
¡û
>W1711360760
MDJX01000259
Actinomycetota
Clavibacter michiganensis [MDJX]
7860
7787
-
Ala
TGC
[ENA]
¡û
>W1711360814
MDJY01000060
Actinomycetota
Clavibacter michiganensis [MDJY]
154615
154542
-
Ala
TGC
[ENA]
¡û
>W1711360854
MDJZ01000017
Actinomycetota
Clavibacter michiganensis [MDJZ]
395500
395573
+
Ala
TGC
[ENA]
¡û
>C171127421
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
10870
10943
+
Ala
TGC
-
¡û
>C006134
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
11379
11451
+
Ala
TGC
[Ensembl]
¡û
>WENV180318039
OBKL01040290
[OBKL] soil metagenome; Alaskan Permafrost
153
79
-
Ala
TGC
[ENA]
¢þ
>WENV180320571
OBKO01109105
[OBKO] soil metagenome; Alaskan Permafrost
134
60
-
Ala
TGC
[ENA]
¢þ
>W141212779
AZQZ01000003
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
60471
60398
-
Ala
TGC
[ENA]
¡û
>C08003531
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
12438
12511
+
Ala
TGC
[Ensembl]
¡û
>WENV170784311
MCHG01000712
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
6210
6283
+
Ala
TGC
[ENA]
¢þ
>C181048868
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
11386
11459
+
Ala
TGC
-
¡û
>C181048912
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
11386
11459
+
Ala
TGC
-
¡û
>C191071516
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
2460991
2460918
-
Ala
TGC
-
¡û
>W141809728
JPRS01000418
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
922
849
-
Ala
TGC
[ENA]
¡û
>W141809732
JPRS01000645
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
123
50
-
Ala
TGC
[ENA]
¡û
>W1910785506
MQTR01000093
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
31446
31519
+
Ala
TGC
[ENA]
¡û
>W1910839666
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2210478
2210551
+
Ala
TGC
[ENA]
¡û
>W1910839705
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
1802348
1802421
+
Ala
TGC
[ENA]
¡û
>W1910839778
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
235532
235459
-
Ala
TGC
[ENA]
¡û
>W1910839819
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1055280
1055207
-
Ala
TGC
[ENA]
¡û
>W1910839862
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1150707
1150634
-
Ala
TGC
[ENA]
¡û
>W1911539149
OMPO01000003
Actinomycetota
Blastococcus sp. Marseille-P5729 [OMPO]
42799
42874
+
Ala
TGC
[ENA]
¡û
>W1911748134
QWDZ01000006
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
20432
20505
+
Ala
TGC
[ENA]
¡û
>W1911748170
QWEA01000001
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
20176
20249
+
Ala
TGC
[ENA]
¡û
>W1911748213
QWEB01000009
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
25051
25124
+
Ala
TGC
[ENA]
¡û
>W1911748257
QWEC01000005
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
7742
7669
-
Ala
TGC
[ENA]
¡û
>W1911748300
QWED01000001
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
26348
26421
+
Ala
TGC
[ENA]
¡û
>W1911748343
QWEE01000005
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
3015
2942
-
Ala
TGC
[ENA]
¡û
>W1911749561
QWGS01000003
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
24533
24606
+
Ala
TGC
[ENA]
¡û
>W1911749606
QWGT01000002
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
6799
6726
-
Ala
TGC
[ENA]
¡û
>W1911749649
QWGU01000003
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
6789
6716
-
Ala
TGC
[ENA]
¡û
>W1911749691
QWGV01000001
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
24559
24632
+
Ala
TGC
[ENA]
¡û
>W1911823613
QZVS01000092
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
98903
98830
-
Ala
TGC
[ENA]
¡û
>W1810168614
PJJJ01000030
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
134690
134763
+
Ala
TGC
[ENA]
¡û
>W1810168644
PJJK01000084
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
19286
19213
-
Ala
TGC
[ENA]
¡û
>W1810168712
PJJL01000072
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
176134
176207
+
Ala
TGC
[ENA]
¡û
>W1810168767
PJJM01000105
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
29270
29197
-
Ala
TGC
[ENA]
¡û
>W1810168783
PJJN01000029
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
24021
23948
-
Ala
TGC
[ENA]
¡û
>W1810168845
PJJO01000059
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
49673
49600
-
Ala
TGC
[ENA]
¡û
>W1810168878
PJJP01000032
Actinomycetota
Cryobacterium sp. N22 [PJJP]
131316
131243
-
Ala
TGC
[ENA]
¡û
>W1810168917
PJJQ01000030
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
38249
38176
-
Ala
TGC
[ENA]
¡û
>W1810168972
PJJR01000052
Actinomycetota
Cryobacterium sp. N19 [PJJR]
222773
222700
-
Ala
TGC
[ENA]
¡û
>W1810169016
PJJS01000046
Actinomycetota
Cryobacterium sp. M96 [PJJS]
76358
76285
-
Ala
TGC
[ENA]
¡û
>W1810169062
PJJT01000089
Actinomycetota
Cryobacterium sp. M91 [PJJT]
131150
131077
-
Ala
TGC
[ENA]
¡û
>W1810169106
PJJU01000053
Actinomycetota
Cryobacterium sp. M25 [PJJU]
49844
49771
-
Ala
TGC
[ENA]
¡û
>W1810169152
PJJV01000074
Actinomycetota
Cryobacterium sp. M23 [PJJV]
44280
44353
+
Ala
TGC
[ENA]
¡û
>W1810169194
PJJW01000038
Actinomycetota
Cryobacterium sp. M15 [PJJW]
147946
147873
-
Ala
TGC
[ENA]
¡û
>SRA1003813
SRR002327.199690
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
115
40
-
Ala
TGC
[SRA]
>W1810240366
PPTG01000022
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
50422
50495
+
Ala
TGC
[ENA]
¡û
>W1810242604
PPXD01000008
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
47393
47466
+
Ala
TGC
[ENA]
¡û
>W1810242641
PPXE01000015
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
47399
47472
+
Ala
TGC
[ENA]
¡û
>W1810242680
PPXF01000012
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
133190
133117
-
Ala
TGC
[ENA]
¡û
>W1810277244
PSTR01000006
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
70250
70177
-
Ala
TGC
[ENA]
¡û
>W1810277280
PSTS01000006
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
66533
66460
-
Ala
TGC
[ENA]
¡û
>W1810277395
PSTV01000001
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
319558
319631
+
Ala
TGC
[ENA]
¡û
>W1810277485
PSTW01000030
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
344041
344114
+
Ala
TGC
[ENA]
¡û
>W1810282067
PSXY01000003
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
181259
181332
+
Ala
TGC
[ENA]
¡û
>W1810365471
PVUE01000004
Actinomycetota
Antricoccus suffuscus DSM 100065 [PVUE]
74309
74382
+
Ala
TGC
[ENA]
¡û
>W1810627252
QHLY01000005
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
679510
679583
+
Ala
TGC
[ENA]
¡û
>W1810860774
QTTK01000001
Actinomycetota
Clavibacter sp. 199 [QTTK]
1108428
1108355
-
Ala
TGC
[ENA]
¡û
>C151075628
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
11386
11459
+
Ala
TGC
[Ensembl]
¡û
>C151095689
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
11400
11473
+
Ala
TGC
-
¡û
>W1511317416
JPXF01000008
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
19210
19137
-
Ala
TGC
[ENA]
¡û
>W1511352430
JROD01000002
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
40825
40752
-
Ala
TGC
[ENA]
¡û
>W1511570113
LAKL01000028
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
83186
83259
+
Ala
TGC
[ENA]
¡û
>C161095666
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
10949
11022
+
Ala
TGC
[Ensembl]
¡û
>C131019521
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
11373
11446
+
Ala
TGC
[Ensembl]
¡û
>W1610867025
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
65577
65504
-
Ala
TGC
[ENA]
¡û
>W1610918524
LSOE01000011
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
135822
135895
+
Ala
TGC
[ENA]
¡û
>W1710520648
FNFU01000005
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
154621
154548
-
Ala
TGC
[ENA]
¡û
>W1710523516
FNIB01000001
Actinomycetota
Cryobacterium flavum [FNIB]
234300
234373
+
Ala
TGC
[ENA]
¡û
>W1710546930
FOCN01000010
Actinomycetota
Cryobacterium luteum [FOCN]
71808
71883
+
Ala
TGC
[ENA]
¡û
>W1710563661
FOPW01000001
Actinomycetota
Cryobacterium levicorallinum [FOPW]
203255
203330
+
Ala
TGC
[ENA]
¡û
>W1710604674
FVZG01000002
Actinomycetota
Clavibacter michiganensis [FVZG]
27642
27569
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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