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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237165 (96 seq.)
>W1710862314
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1871279
1871354
+
Lys
TTT
[ENA]
¡û
>W1710865440
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1871138
1871213
+
Lys
TTT
[ENA]
¡û
>W1710873336
LMMR01000010
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
91441
91366
-
Lys
TTT
[ENA]
¡û
>W1710875483
LMOK01000002
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
609406
609331
-
Lys
TTT
[ENA]
¡û
>W1711018561
LQXA01000028
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
11972
11899
-
Lys
TTT
[ENA]
¡û
>W1711079621
LSOE01000018
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
83584
83659
+
Lys
TTT
[ENA]
¡û
>W1711357160
MDHB01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHB]
635788
635863
+
Lys
TTT
[ENA]
¡û
>W1711357223
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
2806449
2806524
+
Lys
TTT
[ENA]
¡û
>W1711357282
MDHD01000398
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
10967
11042
+
Lys
TTT
[ENA]
¡û
>W1711357305
MDHE01000189
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
10963
11038
+
Lys
TTT
[ENA]
¡û
>W1711357344
MDHF01000033
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
40913
40838
-
Lys
TTT
[ENA]
¡û
>W1711357388
MDHG01000002
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHG]
1170584
1170659
+
Lys
TTT
[ENA]
¡û
>W1711357425
MDHH01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHH]
481330
481405
+
Lys
TTT
[ENA]
¡û
>W1711357505
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
48895
48970
+
Lys
TTT
[ENA]
¡û
>W1711357538
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
2794778
2794853
+
Lys
TTT
[ENA]
¡û
>W1711357601
MDHK01000096
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHK]
19597
19522
-
Lys
TTT
[ENA]
¡û
>W1711357628
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
2851221
2851296
+
Lys
TTT
[ENA]
¡û
>W1711357672
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
2803150
2803225
+
Lys
TTT
[ENA]
¡û
>W1711360685
MDJW01000004
Actinomycetota
Clavibacter michiganensis [MDJW]
93930
94005
+
Lys
TTT
[ENA]
¡û
>W1711360750
MDJX01000145
Actinomycetota
Clavibacter michiganensis [MDJX]
2976
3051
+
Lys
TTT
[ENA]
¡û
>W1711360796
MDJY01000044
Actinomycetota
Clavibacter michiganensis [MDJY]
38449
38374
-
Lys
TTT
[ENA]
¡û
>W1711360842
MDJZ01000011
Actinomycetota
Clavibacter michiganensis [MDJZ]
35392
35317
-
Lys
TTT
[ENA]
¡û
>C171127440
CP021992
Actinomycetota
Cryobacterium sp. LW097 [CP021992]
2922177
2922250
+
Lys
TTT
-
¡û
>C006154
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
2827156
2827231
+
Lys
TTT
[Ensembl]
¡û
>WENV180394169
OBPR01085335
[OBPR] marine metagenome; ENVO:00002042
201
128
-
Lys
TTT
[ENA]
¢þ
>WENV181166460
OEIU01000343
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
122
48
-
Lys
TTT
[ENA]
¢þ
>W141212786
AZQZ01000023
Actinomycetota
Clavibacter michiganensis michiganensis LMG 26808 [AZQZ]
41135
41210
+
Lys
TTT
[ENA]
¡û
>C08003539
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
597753
597828
+
Lys
TTT
[Ensembl]
¡û
>WENV170784248
MCHG01000226
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
1939
2014
+
Lys
TTT
[ENA]
¢þ
>C181048910
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
609476
609401
-
Lys
TTT
-
¡û
>C181048935
CP021038
Actinomycetota
Clavibacter michiganensis subsp. insidiosus ATCC 10253 [CP021038]
2713531
2713606
+
Lys
TTT
-
¡û
>C191071511
CP030033
Actinomycetota
Cryobacterium soli GCJ02 [CP030033]
3583786
3583713
-
Lys
TTT
-
¡û
>W141809725
JPRS01000379
Actinomycetota
Cryobacterium sp. MLB-32 [JPRS]
1132
1205
+
Lys
TTT
[ENA]
¡û
>W1910785508
MQTR01000094
Actinomycetota
Cryobacterium sp. SO1 [MQTR]
24758
24831
+
Lys
TTT
[ENA]
¡û
>W1910839674
MZMM01000001
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-Cs3N [MZMM]
2795801
2795875
+
Lys
TTT
[ENA]
¡û
>W1910839710
MZMN01000003
Actinomycetota
Clavibacter sepedonicus subsp. sepedonicus CFIA-CsR14 [MZMN]
2473675
2473749
+
Lys
TTT
[ENA]
¡û
>W1910839775
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
721406
721331
-
Lys
TTT
[ENA]
¡û
>W1910839816
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1545051
1544977
-
Lys
TTT
[ENA]
¡û
>W1910839859
MZMQ01000001
Actinomycetota
Clavibacter michiganensis subsp. tessellarius ATCC 33566 [MZMQ]
1652805
1652731
-
Lys
TTT
[ENA]
¡û
>W1911748164
QWDZ01000272
Actinomycetota
Clavibacter michiganensis CFBP 1195 [QWDZ]
1837
1762
-
Lys
TTT
[ENA]
¡û
>W1911748207
QWEA01000655
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
914
839
-
Lys
TTT
[ENA]
¡û
>W1911748251
QWEB01000281
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
1358
1284
-
Lys
TTT
[ENA]
¡û
>W1911748255
QWEC01000003
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
24870
24796
-
Lys
TTT
[ENA]
¡û
>W1911748323
QWED01000116
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
3407
3333
-
Lys
TTT
[ENA]
¡û
>W1911748358
QWEE01000038
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
3402
3328
-
Lys
TTT
[ENA]
¡û
>W1911749569
QWGS01000030
Actinomycetota
Clavibacter phaseoli subsp. chilensis CFBP 8217 [QWGS]
1639
1565
-
Lys
TTT
[ENA]
¡û
>W1911749616
QWGT01000015
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
11281
11207
-
Lys
TTT
[ENA]
¡û
>W1911749671
QWGU01000094
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
5940
6014
+
Lys
TTT
[ENA]
¡û
>W1911749703
QWGV01000032
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
828
754
-
Lys
TTT
[ENA]
¡û
>W1911823619
QZVS01000094
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
70801
70727
-
Lys
TTT
[ENA]
¡û
>W1810089941
PGFB01000003
Actinomycetota
Compostimonas suwonensis DSM 25625 [PGFB]
138797
138723
-
Lys
TTT
[ENA]
¡û
>W1810168635
PJJJ01000037
Actinomycetota
Cryobacterium sp. Y82 [PJJJ]
96419
96492
+
Lys
TTT
[ENA]
¡û
>W1810168677
PJJK01000118
Actinomycetota
Cryobacterium sp. Y62 [PJJK]
130175
130248
+
Lys
TTT
[ENA]
¡û
>W1810168702
PJJL01000069
Actinomycetota
Cryobacterium sp. Y57 [PJJL]
168748
168675
-
Lys
TTT
[ENA]
¡û
>W1810168754
PJJM01000095
Actinomycetota
Cryobacterium sp. Y50 [PJJM]
53828
53755
-
Lys
TTT
[ENA]
¡û
>W1810168794
PJJN01000034
Actinomycetota
Cryobacterium sp. Y29 [PJJN]
10418
10491
+
Lys
TTT
[ENA]
¡û
>W1810168847
PJJO01000060
Actinomycetota
Cryobacterium sp. Y11 [PJJO]
89011
89084
+
Lys
TTT
[ENA]
¡û
>W1810168873
PJJP01000026
Actinomycetota
Cryobacterium sp. N22 [PJJP]
4640
4567
-
Lys
TTT
[ENA]
¡û
>W1810168930
PJJQ01000033
Actinomycetota
Cryobacterium sp. N21 [PJJQ]
174433
174360
-
Lys
TTT
[ENA]
¡û
>W1810168969
PJJR01000051
Actinomycetota
Cryobacterium sp. N19 [PJJR]
172837
172764
-
Lys
TTT
[ENA]
¡û
>W1810169000
PJJS01000041
Actinomycetota
Cryobacterium sp. M96 [PJJS]
55111
55184
+
Lys
TTT
[ENA]
¡û
>W1810169077
PJJT01000091
Actinomycetota
Cryobacterium sp. M91 [PJJT]
342449
342522
+
Lys
TTT
[ENA]
¡û
>W1810169086
PJJU01000033
Actinomycetota
Cryobacterium sp. M25 [PJJU]
29882
29809
-
Lys
TTT
[ENA]
¡û
>W1810169172
PJJV01000082
Actinomycetota
Cryobacterium sp. M23 [PJJV]
182017
181944
-
Lys
TTT
[ENA]
¡û
>W1810169214
PJJW01000041
Actinomycetota
Cryobacterium sp. M15 [PJJW]
309207
309280
+
Lys
TTT
[ENA]
¡û
>W1810169225
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
1157146
1157220
+
Lys
TTT
[ENA]
¡û
>W1810240358
PPTG01000002
Actinomycetota
Cryobacterium aureum Hh31 [PPTG]
73997
73924
-
Lys
TTT
[ENA]
¡û
>W1810242580
PPXD01000001
Actinomycetota
Cryobacterium zongtaii TMN-42 [PPXD]
216139
216066
-
Lys
TTT
[ENA]
¡û
>W1810242638
PPXE01000011
Actinomycetota
Cryobacterium zongtaii TMN-39-1 [PPXE]
216408
216335
-
Lys
TTT
[ENA]
¡û
>W1810242710
PPXF01000060
Actinomycetota
Cryobacterium zongtaii TMB1-8 [PPXF]
81552
81479
-
Lys
TTT
[ENA]
¡û
>W1810277228
PSTR01000002
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
282780
282854
+
Lys
TTT
[ENA]
¡û
>W1810277278
PSTS01000005
Actinomycetota
Clavibacter michiganensis AY1A6 [PSTS]
80921
80846
-
Lys
TTT
[ENA]
¡û
>W1810277427
PSTV01000023
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
195638
195712
+
Lys
TTT
[ENA]
¡û
>W1810277480
PSTW01000027
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
195966
196040
+
Lys
TTT
[ENA]
¡û
>W1810282086
PSXY01000014
Actinomycetota
Clavibacter michiganensis AY1B3 [PSXY]
50868
50943
+
Lys
TTT
[ENA]
¡û
>W1810476267
QANL01000001
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
257111
257186
+
Lys
TTT
[ENA]
¡û
>W1810627273
QHLY01000012
Actinomycetota
Cryobacterium arcticum SK-1 [QHLY]
1797989
1798064
+
Lys
TTT
[ENA]
¡û
>W1810860805
QTTK01000004
Actinomycetota
Clavibacter sp. 199 [QTTK]
53794
53868
+
Lys
TTT
[ENA]
¡û
>C151075650
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
2735317
2735392
+
Lys
TTT
[Ensembl]
¡û
>C151095710
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
2582893
2582968
+
Lys
TTT
-
¡û
>W1511317411
JPXF01000005
Actinomycetota
Cryobacterium roopkundense RuG17 [JPXF]
17528
17455
-
Lys
TTT
[ENA]
¡û
>W1511352461
JROD01000015
Actinomycetota
Clavibacter michiganensis CF11 [JROD]
40478
40403
-
Lys
TTT
[ENA]
¡û
>W1511570105
LAKL01000026
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
24061
24136
+
Lys
TTT
[ENA]
¡û
>C161095685
CP016282
Actinomycetota
Cryobacterium arcticum PAMC 27867 [CP016282]
3152563
3152636
+
Lys
TTT
[Ensembl]
¡û
>C131019541
HE614873
Actinomycetota
Clavibacter nebraskensis NCPPB 2581 type strain: NCPPB 2581 [HE614873]
2601540
2601615
+
Lys
TTT
[Ensembl]
¡û
>W1610724660
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1871279
1871354
+
Lys
TTT
[ENA]
¡û
>W1610727786
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1871138
1871213
+
Lys
TTT
[ENA]
¡û
>W1610735682
LMMR01000010
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
91441
91366
-
Lys
TTT
[ENA]
¡û
>W1610737829
LMOK01000002
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
609406
609331
-
Lys
TTT
[ENA]
¡û
>W1610867037
LQXA01000028
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
11972
11899
-
Lys
TTT
[ENA]
¡û
>W1610918531
LSOE01000018
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis [LSOE]
83584
83659
+
Lys
TTT
[ENA]
¡û
>W1710520643
FNFU01000004
Actinomycetota
Cryobacterium psychrotolerans [FNFU]
69631
69706
+
Lys
TTT
[ENA]
¡û
>W1710523522
FNIB01000002
Actinomycetota
Cryobacterium flavum [FNIB]
248220
248295
+
Lys
TTT
[ENA]
¡û
>W1710546905
FOCN01000002
Actinomycetota
Cryobacterium luteum [FOCN]
404332
404257
-
Lys
TTT
[ENA]
¡û
>W1710563683
FOPW01000007
Actinomycetota
Cryobacterium levicorallinum [FOPW]
133973
133898
-
Lys
TTT
[ENA]
¡û
>W1710604679
FVZG01000004
Actinomycetota
Clavibacter michiganensis [FVZG]
201019
201094
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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