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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23718 (82 seq.)
>W1710852532
LLVU01000034
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
197845
197934
+
Ser
GGA
[ENA]
¡û
>W1710852559
LLVV01000007
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
31844
31933
+
Ser
GGA
[ENA]
¡û
>W1710853427
LLWQ01000217
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
1855
1766
-
Ser
GGA
[ENA]
¡û
>W1710889757
LNBC01000030
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
123451
123540
+
Ser
GGA
[ENA]
¡û
>W1711135092
LUYN01000070
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
742
653
-
Ser
GGA
[ENA]
¡û
>W1712104736
NIPZ01000003
Alphaproteobacteria
Paracoccus yeei [NIPZ]
3404
3493
+
Ser
GGA
[ENA]
¡û
>C171067771
CP017781
Alphaproteobacteria
Rhodobacter sp. LPB0142 [CP017781]
1717968
1718057
+
Ser
GGA
-
¡û
>C171107693
CP020442
Alphaproteobacteria
Paracoccus yeei FDAARGOS_252 [CP020442]
675871
675782
-
Ser
GGA
-
¡û
>C171110798
CP020612
Alphaproteobacteria
Paracoccus contaminans RKI 16-01929T [CP020612]
72716
72627
-
Ser
GGA
-
¡û
>W131158919
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
637412
637323
-
Ser
GGA
[ENA]
¡û
>C016012
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
948593
948682
+
Ser
GGA
[Ensembl]
¡û
>W141191583
AYPR01000034
Alphaproteobacteria
Rhodobacter capsulatus DE442 [AYPR]
41851
41762
-
Ser
GGA
[ENA]
¡û
>W141191718
AYPY01000024
Alphaproteobacteria
Rhodobacter capsulatus YW1 [AYPY]
227802
227891
+
Ser
GGA
[ENA]
¡û
>W141191773
AYPZ01000040
Alphaproteobacteria
Rhodobacter capsulatus YW2 [AYPZ]
41106
41017
-
Ser
GGA
[ENA]
¡û
>W141191796
AYQA01000002
Alphaproteobacteria
Rhodobacter capsulatus B6 [AYQA]
7000
6911
-
Ser
GGA
[ENA]
¡û
>W141191875
AYQB01000039
Alphaproteobacteria
Rhodobacter capsulatus Y262 [AYQB]
41890
41801
-
Ser
GGA
[ENA]
¡û
>W141191922
AYQC01000030
Alphaproteobacteria
Rhodobacter capsulatus R121 [AYQC]
41890
41801
-
Ser
GGA
[ENA]
¡û
>W141216624
AZVA01000005
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
173424
173513
+
Ser
GGA
[ENA]
¡û
>W141277320
JAEM01000043
Alphaproteobacteria
Paracoccus pantotrophus J46 [JAEM]
9893
9804
-
Ser
GGA
[ENA]
¡û
>W141277354
JAEN01000009
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
39037
39126
+
Ser
GGA
[ENA]
¡û
>W141279584
JAGK01000020
Alphaproteobacteria
Paracoccus pantotrophus J40 [JAGK]
24162
24073
-
Ser
GGA
[ENA]
¡û
>WENV183729327
PJTQ01022258
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
760
849
+
Ser
GGA
[ENA]
¢þ
>WENV170564883
CZPY01000030
[CZPY] metagenome; PAHs-polluted Soil
123451
123540
+
Ser
GGA
[ENA]
¢þ
>PL191000041
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
948593
948682
+
Ser
GGA
[Ensembl]
¡û
>W141485046
JFZB01000031
Alphaproteobacteria
Paenirhodobacter enshiensis [JFZB]
43159
43248
+
Ser
GGA
[ENA]
¡û
>C181099810
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
181238
181149
-
Ser
GGA
-
¡û
>C181119687
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
1377143
1377054
-
Ser
GGA
-
¡û
>C181190855
CP030239
Alphaproteobacteria
Paracoccus mutanolyticus RSP-02 [CP030239]
669323
669234
-
Ser
GGA
-
¡û
>C181203413
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
2296258
2296169
-
Ser
GGA
-
¡û
>C191073598
CP031078
Alphaproteobacteria
Paracoccus yeei CCUG 32053 [CP031078]
2184486
2184397
-
Ser
GGA
-
¡û
>W09103073
AAIT01000027
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
22635
22546
-
Ser
GGA
[ENA]
¡û
>C191134383
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
2542992
2543081
+
Ser
GGA
-
¡û
>W141558887
JHWH01000038
Alphaproteobacteria
Paracoccus yeei ATCC BAA-599 [JHWH]
15933
16022
+
Ser
GGA
[ENA]
¡û
>W1911245319
NSJZ01000002
Alphaproteobacteria
Paracoccus salipaludis WN007 [NSJZ]
324211
324300
+
Ser
GGA
[ENA]
¡û
>W1911283653
NTJD01000010
Alphaproteobacteria
Pseudothioclava arenosa CAU 1312 [NTJD]
43076
42987
-
Ser
GGA
[ENA]
¡û
>W1911495123
OBMP01000006
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
228459
228548
+
Ser
GGA
[ENA]
¡û
>W1911495380
OBMT01000018
Alphaproteobacteria
Rhodobacter maris JA276 [OBMT]
52798
52887
+
Ser
GGA
[ENA]
¡û
>W1810236002
PPGA01000025
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
18036
18125
+
Ser
GGA
[ENA]
¡û
>W1810268894
PRDS01000003
Alphaproteobacteria
Albidovulum inexpectatum DSM 12048 [PRDS]
288414
288503
+
Ser
GGA
[ENA]
¡û
>W1810486269
QAXT01000007
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
227044
227133
+
Ser
GGA
[ENA]
¡û
>W1810585305
QFCQ01000008
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
3442
3531
+
Ser
GGA
[ENA]
¡û
>W1810672436
QJTK01000014
Alphaproteobacteria
Rhodobacter viridis JA737 [QJTK]
6915
6826
-
Ser
GGA
[ENA]
¡û
>W1810685798
QKZO01000001
Alphaproteobacteria
Rhodobacter capsulatus DSM 1710 [QKZO]
178872
178783
-
Ser
GGA
[ENA]
¡û
>W1810697115
QLUV01000003
Alphaproteobacteria
Paracoccus endophyticus SYSUP0003 [QLUV]
37662
37573
-
Ser
GGA
[ENA]
¡û
>W1810721633
QNSD01000009
Alphaproteobacteria
Rhodobacter sp. 140A [QNSD]
31989
31900
-
Ser
GGA
[ENA]
¡û
>W1810750729
QOZU01000005
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
34731
34642
-
Ser
GGA
[ENA]
¡û
>W1810762340
QPML01000104
Alphaproteobacteria
Paracoccus versutus MAL 1HM19 [QPML]
11472
11383
-
Ser
GGA
[ENA]
¡û
>W1810862253
QTUJ01000002
Alphaproteobacteria
Paracoccus versutus DSM 17099 [QTUJ]
908029
908118
+
Ser
GGA
[ENA]
¡û
>W1810884843
QUMX01000005
Alphaproteobacteria
Paracoccus versutus DSM 582 [QUMX]
28061
28150
+
Ser
GGA
[ENA]
¡û
>C10110632
CP001312
Alphaproteobacteria
Rhodobacter capsulatus SB 1003 [CP001312]
3142137
3142048
-
Ser
GGA
[Ensembl]
¡û
>C11117031
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
755260
755349
+
Ser
GGA
[Ensembl]
¡û
>W1511348575
JRKN01000048
Alphaproteobacteria
Paracoccus halophilus JCM 14014 [JRKN]
14676
14765
+
Ser
GGA
[ENA]
¡û
>W1511348594
JRKO01000007
Alphaproteobacteria
Paracoccus versutus DSM 582 [JRKO]
108658
108569
-
Ser
GGA
[ENA]
¡û
>W1511348641
JRKP01000012
Alphaproteobacteria
Paracoccus sanguinis 39524 [JRKP]
20358
20447
+
Ser
GGA
[ENA]
¡û
>W1511348689
JRKQ01000024
Alphaproteobacteria
Paracoccus sanguinis 5503 [JRKQ]
8323
8412
+
Ser
GGA
[ENA]
¡û
>W1511348757
JRKR01000131
Alphaproteobacteria
Paracoccus sanguinis 10990 [JRKR]
7686
7775
+
Ser
GGA
[ENA]
¡û
>W1511348766
JRKS01000001
Alphaproteobacteria
Paracoccus sphaerophysae HAMBI 3106 [JRKS]
166160
166249
+
Ser
GGA
[ENA]
¡û
>W1511348838
JRKT01000052
Alphaproteobacteria
Paracoccus sanguinis 4681 [JRKT]
14295
14206
-
Ser
GGA
[ENA]
¡û
>W11143062
AEPN01000058
Alphaproteobacteria
Paracoccus sp. TRP [AEPN]
3681
3592
-
Ser
GGA
[ENA]
¡û
>W1610049828
BBFH01000159
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
2948
3037
+
Ser
GGA
[ENA]
¡û
>W1610081507
BDDO01000026
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
33970
34059
+
Ser
GGA
[ENA]
¡û
>WENV070726
AACY023820233
Marine microbial communities from Global Ocean Sampling (GOS)
342
251
-
Ser
GGA
[ENA]
>W1610715671
LLVU01000034
Alphaproteobacteria
Rhodobacter capsulatus [LLVU]
197845
197934
+
Ser
GGA
[ENA]
¡û
>W1610715698
LLVV01000007
Alphaproteobacteria
Rhodobacter capsulatus [LLVV]
31844
31933
+
Ser
GGA
[ENA]
¡û
>W1610716551
LLWQ01000217
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
1855
1766
-
Ser
GGA
[ENA]
¡û
>W1610750135
LNBC01000030
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
123451
123540
+
Ser
GGA
[ENA]
¡û
>W1610946212
LUYN01000070
Alphaproteobacteria
Rhodobacterales bacterium Alpha_01 [LUYN]
742
653
-
Ser
GGA
[ENA]
¡û
>W1710046227
BBFH01000159
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
2948
3037
+
Ser
GGA
[ENA]
¡û
>W1710080158
BDDO01000026
Alphaproteobacteria
Paenirhodobacter sp. MME-103 [BDDO]
33970
34059
+
Ser
GGA
[ENA]
¡û
>W1710513620
FNAH01000005
Alphaproteobacteria
Paracoccus isoporae [FNAH]
216237
216326
+
Ser
GGA
[ENA]
¡û
>W1710514467
FNAY01000014
Alphaproteobacteria
Rhodobacter capsulatus [FNAY]
5142
5053
-
Ser
GGA
[ENA]
¡û
>W1710518480
FNEA01000044
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
21731
21820
+
Ser
GGA
[ENA]
¡û
>W1710521172
FNGE01000005
Alphaproteobacteria
Paracoccus chinensis [FNGE]
2348
2259
-
Ser
GGA
[ENA]
¡û
>W1710528221
FNNA01000003
Alphaproteobacteria
Paracoccus sanguinis [FNNA]
20326
20415
+
Ser
GGA
[ENA]
¡û
>W1710555571
FOJO01000045
Alphaproteobacteria
Paracoccus halophilus [FOJO]
1518
1429
-
Ser
GGA
[ENA]
¡û
>W1710563592
FOPU01000023
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
55259
55348
+
Ser
GGA
[ENA]
¡û
>W1710571587
FOWA01000066
Alphaproteobacteria
Paracoccus pantotrophus [FOWA]
690
601
-
Ser
GGA
[ENA]
¡û
>W1710574701
FOYK01000044
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
5822
5733
-
Ser
GGA
[ENA]
¡û
>W1710581766
FPKI01000010
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
14316
14227
-
Ser
GGA
[ENA]
¡û
>W1710596189
FTMK01000007
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
108937
108848
-
Ser
GGA
[ENA]
¡û
>W1710598829
FTOG01000008
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
8728
8639
-
Ser
GGA
[ENA]
¡û
>W1710608136
FXAQ01000044
Alphaproteobacteria
Paracoccus sp. J56 [FXAQ]
13686
13775
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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