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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237198 (46 seq.)
>W1710796476
LJSC01000046
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
25516
25591
+
Ala
CGC
[ENA]
¡û
>W131224018
AUCM01000005
Alphaproteobacteria
Gemmobacter nectariphilus DSM 15620 [AUCM]
186202
186277
+
Ala
CGC
[ENA]
¡û
>W1711421740
MHZR01000253
Alphaproteobacteria
Rhodobacteraceae bacterium GWE1_64_9 [MHZR]
942
1017
+
Ala
CGC
[ENA]
¡û
>W1711421769
MHZS01000146
Alphaproteobacteria
Rhodobacteraceae bacterium GWF1_65_7 [MHZS]
5438
5363
-
Ala
CGC
[ENA]
¡û
>W1711506162
MKWD01000062
Alphaproteobacteria
Rhodobacterales bacterium 65-51 [MKWD]
114492
114417
-
Ala
CGC
[ENA]
¡û
>W1711585662
MNZZ01000164
Alphaproteobacteria
Rhodobacteraceae bacterium CG2_30_10_405 [MNZZ]
1364
1439
+
Ala
CGC
[ENA]
¡û
>W1712104558
NIPU01000020
Alphaproteobacteria
Haematobacter massiliensis [NIPU]
76504
76429
-
Ala
CGC
[ENA]
¡û
>W1712104595
NIPV01000047
Alphaproteobacteria
Haematobacter missouriensis [NIPV]
24343
24268
-
Ala
CGC
[ENA]
¡û
>W1712104648
NIPW01000038
Alphaproteobacteria
Haematobacter genomosp. 1 [NIPW]
4014
3939
-
Ala
CGC
[ENA]
¡û
>W1712104670
NIPX01000004
Alphaproteobacteria
Haematobacter missouriensis [NIPX]
43534
43609
+
Ala
CGC
[ENA]
¡û
>W1712104726
NIPY01000048
Alphaproteobacteria
Haematobacter massiliensis [NIPY]
1846
1771
-
Ala
CGC
[ENA]
¡û
>WENV180250900
OBEQ010322632
[OBEQ] groundwater metagenome; groundwater
12745
12818
+
Ala
CGC
[ENA]
¢þ
>WENV180398866
OBQB01010439
[OBQB] marine metagenome; ENVO.00002150
307
382
+
Ala
CGC
[ENA]
¢þ
>WENV181370861
OFQT01022471
[OFQT] freshwater metagenome; Freshwater Lake
420
495
+
Ala
CGC
[ENA]
¢þ
>WENV170010248
APMI01011435
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
9082
9007
-
Ala
CGC
[ENA]
¢þ
>WENV170709550
LNFM01000451
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
35799
35874
+
Ala
CGC
[ENA]
¢þ
>WENV170710806
LNFM01002697
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16050
15975
-
Ala
CGC
[ENA]
¢þ
>WENV170711091
LNFM01003506
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
20799
20874
+
Ala
CGC
[ENA]
¢þ
>W141461726
JFGS01000022
Alphaproteobacteria
Haematobacter missouriensis [JFGS]
24353
24278
-
Ala
CGC
[ENA]
¡û
>WENV170973373
MTKY01033798
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
901
826
-
Ala
CGC
[ENA]
¢þ
>C181169782
CP028918
Alphaproteobacteria
Gemmobacter aquarius HYN0069 [CP028918]
2821172
2821097
-
Ala
CGC
-
¡û
>C181194193
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
666726
666651
-
Ala
CGC
-
¡û
>W141523469
JGYG01000003
Alphaproteobacteria
Haematobacter massiliensis [JGYG]
424103
424028
-
Ala
CGC
[ENA]
¡û
>C191123083
CP034328
Alphaproteobacteria
Tabrizicola piscis K13M18 [CP034328]
1516402
1516327
-
Ala
CGC
-
¡û
>C191144254
CP035510
Alphaproteobacteria
Haematobacter massiliensis OT1 [CP035510]
2307781
2307706
-
Ala
CGC
-
¡û
>W1911495022
OBMN01000002
Alphaproteobacteria
Phaeovulum vinaykumarii JA123 [OBMN]
402585
402510
-
Ala
CGC
[ENA]
¡û
>W1911787295
QXXQ01000004
Alphaproteobacteria
Gemmobacter lutimaris YJ-T1-11 [QXXQ]
148738
148813
+
Ala
CGC
[ENA]
¡û
>W1810174035
PJON01000005
Alphaproteobacteria
Tabrizicola aquatica RCRI19 [PJON]
58944
59019
+
Ala
CGC
[ENA]
¡û
>W1810351387
PVEP01000014
Alphaproteobacteria
Defluviimonas denitrificans DSM 18921 [PVEP]
20804
20729
-
Ala
CGC
[ENA]
¡û
>W1810444996
PZKF01000016
Alphaproteobacteria
Phaeovulum veldkampii DSM 11550 [PZKF]
51822
51747
-
Ala
CGC
[ENA]
¡û
>W1810504100
QBKP01000015
Alphaproteobacteria
Gemmobacter caeni DSM 21823 [QBKP]
116893
116968
+
Ala
CGC
[ENA]
¡û
>W1810707380
QNHG01000001
Alphaproteobacteria
Pseudogemmobacter bohemicus Cd-10 [QNHG]
253161
253086
-
Ala
CGC
[ENA]
¡û
>SRA1030116
SRR035087.229905
454 Sequencing (SRP001808)
391
319
-
Ala
CGC
[SRA]
>WENV043879
AACY022366895
Marine microbial communities from Global Ocean Sampling (GOS)
408
485
+
Ala
CGC
[ENA]
>C161003399
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
1168895
1168970
+
Ala
CGC
[Ensembl]
¡û
>C161043370
CP012661
Alphaproteobacteria
Frigidibacter mobilis cai42 [CP012661]
2890853
2890778
-
Ala
CGC
[Ensembl]
¡û
>W1610660433
LJSC01000046
Alphaproteobacteria
Gemmobacter sp. LW-1 [LJSC]
25516
25591
+
Ala
CGC
[ENA]
¡û
>W1610673142
LKEE01000023
Alphaproteobacteria
Brucella melitensis C-573 [LKEE]
123329
123254
-
Ala
CGC
[ENA]
¡û
>W1610720580
LMAU01000004
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
97550
97475
-
Ala
CGC
[ENA]
¡û
>W1610896260
LRUK01000029
Alphaproteobacteria
Sphingobium sp. AM [LRUK]
1742
1667
-
Ala
CGC
[ENA]
¡û
>W1610914250
LSJZ01000232
Alphaproteobacteria
Erythrobacter donghaensis [LSJZ]
870
945
+
Ala
CGC
[ENA]
¡û
>W1710546399
FOCE01000007
Alphaproteobacteria
Gemmobacter aquatilis [FOCE]
993
918
-
Ala
CGC
[ENA]
¡û
>W1710574075
FOXZ01000009
Alphaproteobacteria
Nitratireductor indicus [FOXZ]
45703
45628
-
Ala
CGC
[ENA]
¡û
>W1710599128
FTOM01000002
Alphaproteobacteria
Phaeovulum vinaykumarii [FTOM]
410681
410756
+
Ala
CGC
[ENA]
¡û
>W1710599508
FTOT01000009
Alphaproteobacteria
Gemmobacter megaterium [FTOT]
83308
83383
+
Ala
CGC
[ENA]
¡û
>W1710609072
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
756130
756205
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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