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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237222 (32 seq.)
>W1710799907
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17355
17430
+
Glu
TTC
[ENA]
¡û
>W1710799908
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17561
17636
+
Glu
TTC
[ENA]
¡û
>W1710799909
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17743
17818
+
Glu
TTC
[ENA]
¡û
>W1710799910
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17926
18001
+
Glu
TTC
[ENA]
¡û
>W1710799911
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
18240
18315
+
Glu
TTC
[ENA]
¡û
>W1710803961
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
20600
20675
+
Glu
TTC
[ENA]
¡û
>W1710803962
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
20806
20881
+
Glu
TTC
[ENA]
¡û
>W1710803963
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
21005
21080
+
Glu
TTC
[ENA]
¡û
>W1710803964
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
21204
21279
+
Glu
TTC
[ENA]
¡û
>W1710803965
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
21520
21595
+
Glu
TTC
[ENA]
¡û
>WENV170112038
CEGC01002644
[CEGC] microbial mat metagenome; grass silage
313
238
-
Glu
TTC
[ENA]
¢þ
>WENV170112039
CEGC01002644
[CEGC] microbial mat metagenome; grass silage
187
112
-
Glu
TTC
[ENA]
¢þ
>WENV170112095
CEGD01000362
[CEGD] microbial mat metagenome; grass silage
2916
2841
-
Glu
TTC
[ENA]
¢þ
>WENV170780786
MAAB01021982
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1389
1314
-
Glu
TTC
[ENA]
¢þ
>C161052243
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1901204
1901279
+
Glu
TTC
[Ensembl]
¡û
>C161052244
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1901410
1901485
+
Glu
TTC
[Ensembl]
¡û
>C161052245
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1901609
1901684
+
Glu
TTC
[Ensembl]
¡û
>C161052246
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1901790
1901865
+
Glu
TTC
[Ensembl]
¡û
>C161052247
CP013145
Gammaproteobacteria
Colwellia sp. MT41 [CP013145]
1902105
1902180
+
Glu
TTC
[Ensembl]
¡û
>W1610663864
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17355
17430
+
Glu
TTC
[ENA]
¡û
>W1610663865
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17561
17636
+
Glu
TTC
[ENA]
¡û
>W1610663866
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17743
17818
+
Glu
TTC
[ENA]
¡û
>W1610663867
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
17926
18001
+
Glu
TTC
[ENA]
¡û
>W1610663868
LJVG01000031
Gammaproteobacteria
Colwellia sp. MT2012 [LJVG]
18240
18315
+
Glu
TTC
[ENA]
¡û
>W1610667818
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
20600
20675
+
Glu
TTC
[ENA]
¡û
>W1610667819
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
20806
20881
+
Glu
TTC
[ENA]
¡û
>W1610667820
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
21005
21080
+
Glu
TTC
[ENA]
¡û
>W1610667821
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
21204
21279
+
Glu
TTC
[ENA]
¡û
>W1610667822
LJYX01000011
Gammaproteobacteria
Colwellia sp. TT2012 [LJYX]
21520
21595
+
Glu
TTC
[ENA]
¡û
>W1710087347
BDQM01000012
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
18063
18138
+
Glu
TTC
[ENA]
¡û
>W1710087348
BDQM01000012
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
18246
18321
+
Glu
TTC
[ENA]
¡û
>W1710087349
BDQM01000012
Gammaproteobacteria
Colwellia marinimaniae [BDQM]
18429
18504
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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