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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237299 (27 seq.)
>C025755
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
841878
841806
-
Lys
TTT
[Ensembl]
¡û
>WENV181081929
OEAS01512128
[OEAS] human metagenome; G_DNA_Supragingival plaque
127
199
+
Lys
TTT
[ENA]
¢þ
>WENV170671667
LAHU01124639
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
508
436
-
Lys
TTT
[ENA]
¢þ
>C191179254
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
843662
843588
-
Lys
TTT
-
¡û
>C151004503
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
843051
842977
-
Lys
TTT
[Ensembl]
¡û
>C10113604
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
843131
843057
-
Lys
TTT
[Ensembl]
¡û
>C10113648
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
843327
843253
-
Lys
TTT
[Ensembl]
¡û
>C11122914
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
836737
836663
-
Lys
TTT
[Ensembl]
¡û
>C121002422
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
843465
843391
-
Lys
TTT
[Ensembl]
¡û
>C121002467
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
843919
843845
-
Lys
TTT
[Ensembl]
¡û
>C121002512
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
843652
843578
-
Lys
TTT
[Ensembl]
¡û
>C121006117
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
843819
843745
-
Lys
TTT
[Ensembl]
¡û
>C161017275
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
841458
841384
-
Lys
TTT
[Ensembl]
¡û
>C161028040
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
843265
843191
-
Lys
TTT
-
¡û
>C161028084
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
843522
843448
-
Lys
TTT
-
¡û
>C161028128
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
842273
842199
-
Lys
TTT
-
¡û
>C161028172
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
843442
843368
-
Lys
TTT
-
¡û
>C161028216
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
843391
843317
-
Lys
TTT
-
¡û
>C161028260
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
843616
843542
-
Lys
TTT
-
¡û
>C161028305
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
843854
843780
-
Lys
TTT
-
¡û
>C161028349
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
843657
843583
-
Lys
TTT
-
¡û
>C161028393
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
843596
843522
-
Lys
TTT
-
¡û
>C161084206
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
706978
706904
-
Lys
TTT
-
¡û
>C131001879
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
843856
843782
-
Lys
TTT
[Ensembl]
¡û
>C131009510
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
844615
844541
-
Lys
TTT
[Ensembl]
¡û
>C131011371
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
843481
843407
-
Lys
TTT
-
¡û
>C131011415
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
843361
843287
-
Lys
TTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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