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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23731 (61 seq.)
>W1711083288
LSUX01000003
Gammaproteobacteria
Morganella morganii [LSUX]
176248
176337
+
Ser
GGA
[ENA]
¡û
>W1711115381
LUAD01000059
Gammaproteobacteria
Morganella sp. HMSC11D09 [LUAD]
118994
118905
-
Ser
GGA
[ENA]
¡û
>W1711797834
MWUC01000006
Gammaproteobacteria
Morganella morganii [MWUC]
14450
14361
-
Ser
GGA
[ENA]
¡û
>W1711797914
MWUD01000023
Gammaproteobacteria
Morganella morganii [MWUD]
13772
13683
-
Ser
GGA
[ENA]
¡û
>W1711972161
NDBP01000036
Gammaproteobacteria
Morganella morganii [NDBP]
706939
707028
+
Ser
GGA
[ENA]
¡û
>W1712019917
NEYV01000064
Gammaproteobacteria
Morganella morganii subsp. morganii [NEYV]
101445
101356
-
Ser
GGA
[ENA]
¡û
>WENV180497431
OCAE01002005
[OCAE] human gut metagenome; faeces
7519
7430
-
Ser
GGA
[ENA]
¢þ
>WENV181532963
OGHR01000003
[OGHR] metagenome; Human gut stool
279675
279764
+
Ser
GGA
[ENA]
¢þ
>W141212948
AZRH01000005
Gammaproteobacteria
Morganella sp. EGD-HP17 [AZRH]
116348
116437
+
Ser
GGA
[ENA]
¡û
>WENV182521716
OIWQ01030752
[OIWQ] human gut metagenome; faeces
1005
916
-
Ser
GGA
[ENA]
¢þ
>W141256909
CBWE010000077
Gammaproteobacteria
Morganella morganii IS15 [CBWE]
430268
430179
-
Ser
GGA
[ENA]
¡û
>WENV182595669
OJIY01000001
[OJIY] metagenome; faeces
190301
190212
-
Ser
GGA
[ENA]
¢þ
>WENV182603983
OJJN01002083
[OJJN] metagenome; faeces
2152
2241
+
Ser
GGA
[ENA]
¢þ
>WENV182605653
OJJS01000041
[OJJS] metagenome; faeces
2854
2765
-
Ser
GGA
[ENA]
¢þ
>WENV182891288
OKSH01000598
[OKSH] human gut metagenome; faeces
31906
31995
+
Ser
GGA
[ENA]
¢þ
>WENV182953033
OKVX01002079
[OKVX] human gut metagenome; human gut
7203
7292
+
Ser
GGA
[ENA]
¢þ
>WENV183066920
OLIL01002178
[OLIL] metagenome; faeces
1149
1238
+
Ser
GGA
[ENA]
¢þ
>WENV183713393
PDWI01136599
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
449
538
+
Ser
GGA
[ENA]
¢þ
>WENV183772194
PPYF01016672
[PPYF] human gut metagenome; stool from patient with Crohn's disease
121264
121175
-
Ser
GGA
[ENA]
¢þ
>WENV183788537
PPYF01370153
[PPYF] human gut metagenome; stool from patient with Crohn's disease
142738
142649
-
Ser
GGA
[ENA]
¢þ
>C181082929
CP023505
Gammaproteobacteria
Morganella morganii FDAARGOS_365 [CP023505]
1702861
1702950
+
Ser
GGA
-
¡û
>C181123784
CP025933
Gammaproteobacteria
Morganella morganii KC-Tt-01 [CP025933]
1662171
1662082
-
Ser
GGA
-
¡û
>C181125855
CP026046
Gammaproteobacteria
Morganella morganii FDAARGOS_63 [CP026046]
2948534
2948445
-
Ser
GGA
-
¡û
>C181170823
CP028956
Gammaproteobacteria
Morganella morganii AR_0133 [CP028956]
3630275
3630364
+
Ser
GGA
-
¡û
>C181217533
LS483498
Gammaproteobacteria
Morganella morganii NCTC12028 [LS483498]
2154806
2154895
+
Ser
GGA
-
¡û
>C191099428
CP033056
Gammaproteobacteria
Morganella morganii L241 [CP033056]
2076833
2076922
+
Ser
GGA
-
¡û
>C191193591
LR133904
Gammaproteobacteria
Morganella morganii NCTC235 [LR133904]
2081354
2081443
+
Ser
GGA
-
¡û
>W141814687
JQGP01000006
Gammaproteobacteria
Morganella morganii [JQGP]
71121
71032
-
Ser
GGA
[ENA]
¡û
>C141003741
CP004345
Gammaproteobacteria
Morganella morganii subsp. morganii KT [CP004345]
2229094
2229005
-
Ser
GGA
[Ensembl]
¡û
>W1911424302
NXGB01000007
Gammaproteobacteria
Pasteurella oralis WCHPO000540 [NXGB]
87714
87625
-
Ser
GGA
[ENA]
¡û
>W1911426924
NXIQ01000002
Gammaproteobacteria
Morganella morganii E042 [NXIQ]
39519
39608
+
Ser
GGA
[ENA]
¡û
>W1911429664
NXKH01000004
Gammaproteobacteria
Morganella morganii M006 [NXKH]
125779
125690
-
Ser
GGA
[ENA]
¡û
>W1810006172
BFCJ01000061
Gammaproteobacteria
Morganella morganii MH16-367M [BFCJ]
48853
48942
+
Ser
GGA
[ENA]
¡û
>W1810013984
BGLW01000001
Gammaproteobacteria
Morganella morganii TUM2748 [BGLW]
390329
390418
+
Ser
GGA
[ENA]
¡û
>W1810059580
PDLE01000004
Gammaproteobacteria
Morganella morganii FDAARGOS_438 [PDLE]
866561
866472
-
Ser
GGA
[ENA]
¡û
>W1810173806
PJNJ01000013
Gammaproteobacteria
Morganella morganii FAM24091 [PJNJ]
100284
100195
-
Ser
GGA
[ENA]
¡û
>W1810190192
PKJR01000001
Gammaproteobacteria
Morganella morganii UMB1297 [PKJR]
728722
728633
-
Ser
GGA
[ENA]
¡û
>W1810706815
QMKL01000001
Gammaproteobacteria
Morganella morganii MM 190 [QMKL]
625152
625241
+
Ser
GGA
[ENA]
¡û
>W1810761234
QPLM01000001
Gammaproteobacteria
Morganella morganii MM 4 [QPLM]
366967
366878
-
Ser
GGA
[ENA]
¡û
>W1810886806
QUOO01000002
Gammaproteobacteria
Morganella morganii MM 1 [QUOO]
746468
746557
+
Ser
GGA
[ENA]
¡û
>C151006624
CP004391
Gammaproteobacteria
Pasteurella multocida subsp. multocida OH4807 [CP004391]
597781
597870
+
Ser
GGA
[Ensembl]
¡û
>W1511461124
JVME01000030
Gammaproteobacteria
Pasteurella multocida 306_PMUL [JVME]
94690
94779
+
Ser
GGA
[ENA]
¡û
>W1511565710
LAGC01000006
Gammaproteobacteria
Morganella morganii 8066 [LAGC]
460311
460400
+
Ser
GGA
[ENA]
¡û
>C161064922
CP014026
Gammaproteobacteria
Morganella morganii FDAARGOS_172 [CP014026]
1196351
1196262
-
Ser
GGA
-
¡û
>W121111837
ALJX01000009
Gammaproteobacteria
Morganella morganii subsp. morganii KT [ALJX]
50016
50105
+
Ser
GGA
[ENA]
¡û
>W1610077901
BCZU01000001
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
741901
741990
+
Ser
GGA
[ENA]
¡û
>W1610545014
JTJL01000012
Gammaproteobacteria
Gallibacterium salpingitidis [JTJL]
144043
144132
+
Ser
GGA
[ENA]
¡û
>W1610545067
JTJM01000010
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJM]
90441
90352
-
Ser
GGA
[ENA]
¡û
>W1610545342
JTJR01000035
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJR]
103251
103162
-
Ser
GGA
[ENA]
¡û
>W1610545391
JTJS01000106
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJS]
12120
12209
+
Ser
GGA
[ENA]
¡û
>W1610545417
JTJT01000020
Gammaproteobacteria
Gallibacterium salpingitidis [JTJT]
141405
141494
+
Ser
GGA
[ENA]
¡û
>W1610545460
JTJU01000009
Gammaproteobacteria
Gallibacterium salpingitidis [JTJU]
45691
45602
-
Ser
GGA
[ENA]
¡û
>W1610922041
LSUX01000003
Gammaproteobacteria
Morganella morganii [LSUX]
176248
176337
+
Ser
GGA
[ENA]
¡û
>W1710075459
BCZU01000001
Gammaproteobacteria
Morganella morganii subsp. morganii NBRC 3848 [BCZU]
741901
741990
+
Ser
GGA
[ENA]
¡û
>W1710605371
FWWV01000017
Gammaproteobacteria
Pasteurella testudinis DSM 23072 [FWWV]
26969
26880
-
Ser
GGA
[ENA]
¡û
>W1710648145
JTJL01000012
Gammaproteobacteria
Gallibacterium salpingitidis [JTJL]
144043
144132
+
Ser
GGA
[ENA]
¡û
>W1710648198
JTJM01000010
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJM]
90441
90352
-
Ser
GGA
[ENA]
¡û
>W1710648473
JTJR01000035
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJR]
103251
103162
-
Ser
GGA
[ENA]
¡û
>W1710648522
JTJS01000106
Gammaproteobacteria
Gallibacterium genomosp. 3 [JTJS]
12120
12209
+
Ser
GGA
[ENA]
¡û
>W1710648548
JTJT01000020
Gammaproteobacteria
Gallibacterium salpingitidis [JTJT]
141405
141494
+
Ser
GGA
[ENA]
¡û
>W1710648591
JTJU01000009
Gammaproteobacteria
Gallibacterium salpingitidis [JTJU]
45691
45602
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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