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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237346 (83 seq.)
>W1710979221
LPNU01000064
Bacillota
Lacticaseibacillus rhamnosus [LPNU]
2680
2604
-
Thr
CGT
[ENA]
¡û
>W1711092361
LTEA01000162
Bacillota
Pediococcus damnosus [LTEA]
2752
2678
-
Thr
CGT
[ENA]
¡û
>W1711093170
LTET01000143
Bacillota
Lactobacillus sp. HMSC066G01 [LTET]
16881
16957
+
Thr
CGT
[ENA]
¡û
>W1711097440
LTIR01000079
Bacillota
Lactobacillus sp. HMSC077C11 [LTIR]
36400
36476
+
Thr
CGT
[ENA]
¡û
>W1711218605
LXND01000042
Bacillota
Pediococcus parvulus [LXND]
52256
52182
-
Thr
CGT
[ENA]
¡û
>W1711299192
MAGA01000019
Bacillota
Lacticaseibacillus rhamnosus [MAGA]
2684
2608
-
Thr
CGT
[ENA]
¡û
>W1711461621
MJHB01000005
Bacillota
Lacticaseibacillus rhamnosus [MJHB]
2468
2392
-
Thr
CGT
[ENA]
¡û
>W1711708133
MSTC01000038
Bacillota
Lacticaseibacillus rhamnosus [MSTC]
104212
104288
+
Thr
CGT
[ENA]
¡û
>C171051624
CP016823
Bacillota
Lacticaseibacillus rhamnosus LRB [CP016823]
1565008
1565084
+
Thr
CGT
-
¡û
>WENV180136787
OATN01003150
[OATN] human gut metagenome; faeces
2267
2192
-
Thr
CGT
[ENA]
¢þ
>WENV180137668
OATP01000165
[OATP] human gut metagenome; faeces
3126
3051
-
Thr
CGT
[ENA]
¢þ
>WENV180177886
OAWF01002286
[OAWF] human gut metagenome; faeces
58
133
+
Thr
CGT
[ENA]
¢þ
>WENV180408768
OBUT01000072
[OBUT] human gut metagenome; faeces
2539
2464
-
Thr
CGT
[ENA]
¢þ
>WENV180419870
OBVO01000059
[OBVO] human gut metagenome; faeces
85578
85653
+
Thr
CGT
[ENA]
¢þ
>WENV180432190
OBWI01000431
[OBWI] human gut metagenome; faeces
2571
2496
-
Thr
CGT
[ENA]
¢þ
>WENV180448314
OBXE01008831
[OBXE] human gut metagenome; faeces
674
599
-
Thr
CGT
[ENA]
¢þ
>WENV180452703
OBXK01000148
[OBXK] human gut metagenome; faeces
2460
2385
-
Thr
CGT
[ENA]
¢þ
>W141236553
BBIM01000039
Bacillota
Pediococcus inopinatus [BBIM]
56328
56254
-
Thr
CGT
[ENA]
¡û
>WENV182944028
OKVI01002224
[OKVI] human gut metagenome; human gut
278
203
-
Thr
CGT
[ENA]
¢þ
>WENV183511872
OMJG01008623
[OMJG] food metagenome; Cotija cheese
2460
2385
-
Thr
CGT
[ENA]
¢þ
>C181042085
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
1497771
1497697
-
Thr
CGT
-
¡û
>W09110969
ABWJ01000037
Bacillota
Lacticaseibacillus rhamnosus HN001 [ABWJ]
2405
2329
-
Thr
CGT
[ENA]
¡û
>C191034461
CP025428
Bacillota
Lacticaseibacillus rhamnosus LR-B1 [CP025428]
1920200
1920275
+
Thr
CGT
-
¡û
>C191206552
LR134322
Bacillota
Lacticaseibacillus rhamnosus NCTC13710 [LR134322]
1891277
1891352
+
Thr
CGT
-
¡û
>W141811559
JPZB01000041
Bacillota
Lacticaseibacillus rhamnosus [JPZB]
14379
14455
+
Thr
CGT
[ENA]
¡û
>W1910181213
BJLT01000080
Bacillota
Pediococcus damnosus NBRC 3889 [BJLT]
51
125
+
Thr
CGT
[ENA]
¡û
>W1910792189
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
662170
662096
-
Thr
CGT
[ENA]
¡û
>W1910841652
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
1452366
1452440
+
Thr
CGT
[ENA]
¡û
>W1910841742
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
664378
664304
-
Thr
CGT
[ENA]
¡û
>W1911532117
OGTX02000024
Bacillota
Lacticaseibacillus rhamnosus [OGTX]
2905
2830
-
Thr
CGT
[ENA]
¡û
>W1810472550
QAGX01000001
Bacillota
Lacticaseibacillus rhamnosus DS22_11 [QAGX]
1023638
1023713
+
Thr
CGT
[ENA]
¡û
>W1810472659
QAGZ01000001
Bacillota
Lacticaseibacillus rhamnosus DS15_11 [QAGZ]
2921
2846
-
Thr
CGT
[ENA]
¡û
>W1810472774
QAHB01000004
Bacillota
Lacticaseibacillus rhamnosus DS12_11 [QAHB]
2612
2537
-
Thr
CGT
[ENA]
¡û
>W1810488426
QAZJ01000004
Bacillota
Lacticaseibacillus rhamnosus DS3_11 [QAZJ]
2612
2537
-
Thr
CGT
[ENA]
¡û
>C10108871
FM179322
Bacillota
Lacticaseibacillus rhamnosus GG [FM179322]
1923339
1923415
+
Thr
CGT
-
¡û
>C10108985
FM179323
Bacillota
Lacticaseibacillus rhamnosus Lc 705 [FM179323]
1889538
1889614
+
Thr
CGT
[Ensembl]
¡û
>W1510765727
JANK01000084
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
10248
10174
-
Thr
CGT
[ENA]
¡û
>W1511435147
JUIK01000197
Bacillota
Lacticaseibacillus rhamnosus Lr073 [JUIK]
1061
985
-
Thr
CGT
[ENA]
¡û
>W1511435270
JUIN01000675
Bacillota
Lacticaseibacillus rhamnosus Lr032 [JUIN]
7
83
+
Thr
CGT
[ENA]
¡û
>W1511439941
JUON01000069
Bacillota
Lacticaseibacillus rhamnosus 906_LRHA [JUON]
2465
2389
-
Thr
CGT
[ENA]
¡û
>W1511445918
JUWG01000138
Bacillota
Lacticaseibacillus rhamnosus 708_LRHA [JUWG]
66
142
+
Thr
CGT
[ENA]
¡û
>W1511458136
JVIZ01000142
Bacillota
Lacticaseibacillus rhamnosus 390_LRHA [JVIZ]
47
123
+
Thr
CGT
[ENA]
¡û
>W1511478317
JWHC01000021
Bacillota
Lacticaseibacillus rhamnosus 308 [JWHC]
48515
48591
+
Thr
CGT
[ENA]
¡û
>C121005642
CP003094
Bacillota
Lacticaseibacillus rhamnosus ATCC 8530 [CP003094]
1814649
1814725
+
Thr
CGT
[Ensembl]
¡û
>C161040689
CP012269
Bacillota
Pediococcus damnosus TMW 2.1532 [CP012269]
428793
428719
-
Thr
CGT
-
¡û
>C161040744
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
993896
993822
-
Thr
CGT
-
¡û
>C161040808
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
422676
422602
-
Thr
CGT
-
¡û
>C161040833
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
1467053
1467127
+
Thr
CGT
[Ensembl]
¡û
>C161040896
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
1464500
1464574
+
Thr
CGT
-
¡û
>W121007307
AFZY01000068
Bacillota
Lacticaseibacillus rhamnosus ATCC 21052 [AFZY]
2439
2363
-
Thr
CGT
[ENA]
¡û
>W1610528296
JQBC01000014
Bacillota
Pediococcus inopinatus [JQBC]
37848
37774
-
Thr
CGT
[ENA]
¡û
>W1610528940
JQBR01000004
Bacillota
Pediococcus cellicola [JQBR]
218086
218012
-
Thr
CGT
[ENA]
¡û
>W1610529255
JQBY01000007
Bacillota
Pediococcus ethanolidurans [JQBY]
158
232
+
Thr
CGT
[ENA]
¡û
>W1610543369
JTHS01000034
Bacillota
Lacticaseibacillus rhamnosus [JTHS]
2405
2329
-
Thr
CGT
[ENA]
¡û
>W1610543420
JTHT01000049
Bacillota
Lacticaseibacillus rhamnosus [JTHT]
18531
18607
+
Thr
CGT
[ENA]
¡û
>W1610543577
JTHW01000039
Bacillota
Lacticaseibacillus rhamnosus [JTHW]
2405
2329
-
Thr
CGT
[ENA]
¡û
>W1610543910
JTID01000033
Bacillota
Lacticaseibacillus rhamnosus [JTID]
22942
23018
+
Thr
CGT
[ENA]
¡û
>W1610543984
JTIE01000077
Bacillota
Lacticaseibacillus rhamnosus [JTIE]
5346
5422
+
Thr
CGT
[ENA]
¡û
>W1610544067
JTIG01000035
Bacillota
Lacticaseibacillus rhamnosus [JTIG]
2668
2592
-
Thr
CGT
[ENA]
¡û
>W1610544157
JTII01000001
Bacillota
Lacticaseibacillus rhamnosus [JTII]
2763
2687
-
Thr
CGT
[ENA]
¡û
>W1610544257
JTIJ01000035
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
10654
10730
+
Thr
CGT
[ENA]
¡û
>W1610544498
JTIP01000006
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
70845
70921
+
Thr
CGT
[ENA]
¡û
>W1610547333
JUIP01000030
Bacillota
Lacticaseibacillus rhamnosus [JUIP]
80909
80985
+
Thr
CGT
[ENA]
¡û
>W1610547436
JUIR01000507
Bacillota
Lacticaseibacillus rhamnosus [JUIR]
2
78
+
Thr
CGT
[ENA]
¡û
>W1610547466
JUIS01000740
Bacillota
Lacticaseibacillus rhamnosus [JUIS]
645
569
-
Thr
CGT
[ENA]
¡û
>W1610926399
LTEA01000162
Bacillota
Pediococcus damnosus [LTEA]
2752
2678
-
Thr
CGT
[ENA]
¡û
>W1611003421
LXND01000042
Bacillota
Pediococcus parvulus [LXND]
52256
52182
-
Thr
CGT
[ENA]
¡û
>W1710551846
FOGK01000006
Bacillota
Pediococcus ethanolidurans [FOGK]
453
527
+
Thr
CGT
[ENA]
¡û
>W1710629886
JQBC01000014
Bacillota
Pediococcus inopinatus [JQBC]
37848
37774
-
Thr
CGT
[ENA]
¡û
>W1710630530
JQBR01000004
Bacillota
Pediococcus cellicola [JQBR]
218086
218012
-
Thr
CGT
[ENA]
¡û
>W1710630845
JQBY01000007
Bacillota
Pediococcus ethanolidurans [JQBY]
158
232
+
Thr
CGT
[ENA]
¡û
>W1710646500
JTHS01000034
Bacillota
Lacticaseibacillus rhamnosus [JTHS]
2405
2329
-
Thr
CGT
[ENA]
¡û
>W1710646551
JTHT01000049
Bacillota
Lacticaseibacillus rhamnosus [JTHT]
18531
18607
+
Thr
CGT
[ENA]
¡û
>W1710646708
JTHW01000039
Bacillota
Lacticaseibacillus rhamnosus [JTHW]
2405
2329
-
Thr
CGT
[ENA]
¡û
>W1710647041
JTID01000033
Bacillota
Lacticaseibacillus rhamnosus [JTID]
22942
23018
+
Thr
CGT
[ENA]
¡û
>W1710647115
JTIE01000077
Bacillota
Lacticaseibacillus rhamnosus [JTIE]
5346
5422
+
Thr
CGT
[ENA]
¡û
>W1710647198
JTIG01000035
Bacillota
Lacticaseibacillus rhamnosus [JTIG]
2668
2592
-
Thr
CGT
[ENA]
¡û
>W1710647288
JTII01000001
Bacillota
Lacticaseibacillus rhamnosus [JTII]
2763
2687
-
Thr
CGT
[ENA]
¡û
>W1710647388
JTIJ01000035
Bacillota
Lacticaseibacillus rhamnosus [JTIJ]
10654
10730
+
Thr
CGT
[ENA]
¡û
>W1710647629
JTIP01000006
Bacillota
Lacticaseibacillus rhamnosus [JTIP]
70845
70921
+
Thr
CGT
[ENA]
¡û
>W1710650516
JUIP01000030
Bacillota
Lacticaseibacillus rhamnosus [JUIP]
80909
80985
+
Thr
CGT
[ENA]
¡û
>W1710650619
JUIR01000507
Bacillota
Lacticaseibacillus rhamnosus [JUIR]
2
78
+
Thr
CGT
[ENA]
¡û
>W1710650649
JUIS01000740
Bacillota
Lacticaseibacillus rhamnosus [JUIS]
645
569
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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