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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237348 (89 seq.)
>W1710995648
LQAM01000009
Bacillota
Enterococcus faecalis [LQAM]
465058
465130
+
Phe
GAA
[ENA]
¡û
>W1711094254
LTFT01000059
Bacillota
Enterococcus sp. HMSC078F03 [LTFT]
485
557
+
Phe
GAA
[ENA]
¡û
>W1711771994
MVGQ01000125
Bacillota
Enterococcus faecalis [MVGQ]
15410
15338
-
Phe
GAA
[ENA]
¡û
>W1712109128
NJFB01000001
Bacillota
Enterococcus faecalis [NJFB]
1407506
1407434
-
Phe
GAA
[ENA]
¡û
>C171034002
CP014872
Bacillota
Fructilactobacillus lindneri TMW 1.1993 [CP014872]
1190421
1190349
-
Phe
GAA
-
¡û
>C171034061
CP014907
Bacillota
Fructilactobacillus lindneri TMW 1.481 [CP014907]
1228689
1228617
-
Phe
GAA
-
¡û
>C171084995
CP018830
Bacillota
Enterococcus faecium ISMMS_VRE_9 [CP018830]
1007615
1007690
+
Phe
GAA
-
¡û
>W131012390
AIJH01000001
Bacillota
Enterococcus faecalis B1290 [AIJH]
3682
3754
+
Phe
GAA
[ENA]
¡û
>W131013413
AIQC01000011
Bacillota
Enterococcus faecalis B1696 [AIQC]
5343
5415
+
Phe
GAA
[ENA]
¡û
>W131016434
AISG01000008
Bacillota
Enterococcus faecalis UAA904 [AISG]
5623
5695
+
Phe
GAA
[ENA]
¡û
>W131016496
AISH01000008
Bacillota
Enterococcus faecalis UAA905 [AISH]
5647
5719
+
Phe
GAA
[ENA]
¡û
>W131189706
ASDT01000009
Bacillota
Enterococcus faecalis SF339 [ASDT]
5564
5636
+
Phe
GAA
[ENA]
¡û
>W131190743
ASEO01000017
Bacillota
Enterococcus faecalis SF5039 [ASEO]
5513
5585
+
Phe
GAA
[ENA]
¡û
>W131208944
ATII01000038
Bacillota
Enterococcus faecalis D811610-10 [ATII]
18164
18092
-
Phe
GAA
[ENA]
¡û
>W131209051
ATIK01000100
Bacillota
Enterococcus faecalis 06-MB-S-10 [ATIK]
111
39
-
Phe
GAA
[ENA]
¡û
>WENV180152901
OAUR01000010
[OAUR] human gut metagenome; faeces
4455
4527
+
Phe
GAA
[ENA]
¢þ
>WENV180178344
OAWH01006705
[OAWH] human gut metagenome; faeces
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV180228403
OBBX01000856
[OBBX] human gut metagenome; Infant 1 DOL 13 gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV180559453
OCKC01000164
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
36292
36220
-
Phe
GAA
[ENA]
¢þ
>WENV180623024
OCQD01000133
[OCQD] human gut metagenome; Infant 1 DOL 21 gut
586
658
+
Phe
GAA
[ENA]
¢þ
>W08009563
ABPI01000001
Bacillota
Enterococcus faecalis OG1RF [ABPI]
824459
824531
+
Phe
GAA
[ENA]
¡û
>WENV181811685
OGSZ01000375
[OGSZ] human gut metagenome; fecal sample 3 from infant 8
18807
18735
-
Phe
GAA
[ENA]
¢þ
>W141236534
BBIM01000031
Bacillota
Pediococcus inopinatus [BBIM]
63566
63492
-
Phe
GAA
[ENA]
¡û
>WENV182807923
OJWA01000155
[OJWA] human gut metagenome; human gut
17296
17224
-
Phe
GAA
[ENA]
¢þ
>WENV182815292
OJYQ01000116
[OJYQ] human gut metagenome; human gut
11073
11001
-
Phe
GAA
[ENA]
¢þ
>W141281371
JAHS01000001
Bacillota
Enterococcus faecalis B320 [JAHS]
5715
5787
+
Phe
GAA
[ENA]
¡û
>W141281554
JAHV01000003
Bacillota
Enterococcus faecalis B327 [JAHV]
28248
28320
+
Phe
GAA
[ENA]
¡û
>W141281609
JAHW01000001
Bacillota
Enterococcus faecalis B337 [JAHW]
1165
1237
+
Phe
GAA
[ENA]
¡û
>W141281659
JAHW01000005
Bacillota
Enterococcus faecalis B337 [JAHW]
556725
556797
+
Phe
GAA
[ENA]
¡û
>WENV182840842
OKHO01000110
[OKHO] human gut metagenome; human gut
5761
5833
+
Phe
GAA
[ENA]
¢þ
>WENV182848378
OKKG01007519
[OKKG] human gut metagenome; human gut
618
546
-
Phe
GAA
[ENA]
¢þ
>WENV182852369
OKLX01001116
[OKLX] human gut metagenome; human gut
185
257
+
Phe
GAA
[ENA]
¢þ
>WENV182858438
OKOE01000066
[OKOE] human gut metagenome; human gut
506
578
+
Phe
GAA
[ENA]
¢þ
>C181042098
CP019981
Bacillota
Pediococcus inopinatus DSM 20285 [CP019981]
1169297
1169223
-
Phe
GAA
-
¡û
>W1910748240
MIXQ01000001
Bacillota
Fructilactobacillus lindneri TMW 1.1285 [MIXQ]
237909
237981
+
Phe
GAA
[ENA]
¡û
>W1910748288
MIXR01000001
Bacillota
Fructilactobacillus lindneri TMW 1.1433 [MIXR]
225665
225737
+
Phe
GAA
[ENA]
¡û
>W1910748346
MIXS01000001
Bacillota
Fructilactobacillus lindneri TMW 1.2006 [MIXS]
129165
129093
-
Phe
GAA
[ENA]
¡û
>W1910748387
MIXU01000001
Bacillota
Fructilactobacillus lindneri TMW 1.2007 [MIXU]
126188
126260
+
Phe
GAA
[ENA]
¡û
>W1910748444
MIXV01000001
Bacillota
Fructilactobacillus lindneri TMW 1.2008 [MIXV]
300908
300836
-
Phe
GAA
[ENA]
¡û
>W1910748491
MIXW01000001
Bacillota
Fructilactobacillus lindneri TMW 1.2082 [MIXW]
306526
306454
-
Phe
GAA
[ENA]
¡û
>W1910749156
MIYK01000001
Bacillota
Fructilactobacillus lindneri DSM 20690 = JCM 11027 TMW 1.88 [MIYK]
225702
225774
+
Phe
GAA
[ENA]
¡û
>W1910792178
MRAF01000001
Bacillota
Pediococcus damnosus P58 [MRAF]
1911088
1911162
+
Phe
GAA
[ENA]
¡û
>W1910841699
NAEQ01000002
Bacillota
Pediococcus damnosus VTT E-123216 [NAEQ]
217713
217639
-
Phe
GAA
[ENA]
¡û
>W1910841730
NAER01000002
Bacillota
Pediococcus damnosus VTT E-123212 [NAER]
1849666
1849740
+
Phe
GAA
[ENA]
¡û
>W10125652
AECE01000092
Bacillota
Enterococcus faecalis TX0645 [AECE]
481
553
+
Phe
GAA
[ENA]
¡û
>W1510765756
JANK01000177
Bacillota
Pediococcus damnosus LMG 28219 [JANK]
425
499
+
Phe
GAA
[ENA]
¡û
>W1511402984
JTKS01000024
Bacillota
Enterococcus faecalis 1 [JTKS]
517
589
+
Phe
GAA
[ENA]
¡û
>W1511441105
JUQC01000107
Bacillota
Enterococcus faecalis 864_EFLS [JUQC]
127
55
-
Phe
GAA
[ENA]
¡û
>W1511444625
JUUJ01000080
Bacillota
Enterococcus faecalis 754_EFLS [JUUJ]
170
242
+
Phe
GAA
[ENA]
¡û
>W1511446928
JUXV01000097
Bacillota
Enterococcus faecalis 668_EFLS [JUXV]
193
265
+
Phe
GAA
[ENA]
¡û
>W1511448741
JVAD01000098
Bacillota
Enterococcus faecalis 610_EFLS [JVAD]
193
265
+
Phe
GAA
[ENA]
¡û
>W1511448981
JVAN01000060
Bacillota
Enterococcus faecalis 600_EFLS [JVAN]
170
242
+
Phe
GAA
[ENA]
¡û
>W1511463095
JVOF01000065
Bacillota
Enterococcus faecalis 254_EFLS [JVOF]
18718
18646
-
Phe
GAA
[ENA]
¡û
>W1511465187
JVQP01000052
Bacillota
Enterococcus faecalis 191_EFLS [JVQP]
22249
22177
-
Phe
GAA
[ENA]
¡û
>W1511467361
JVSW01000081
Bacillota
Enterococcus faecalis 135_EFLS [JVSW]
19068
18996
-
Phe
GAA
[ENA]
¡û
>W1511470746
JVXC01000013
Bacillota
Enterococcus faecalis 1248_EFLS [JVXC]
140
68
-
Phe
GAA
[ENA]
¡û
>W11132539
AECE01000092
Bacillota
Enterococcus faecalis TX0645 [AECE]
481
553
+
Phe
GAA
[ENA]
¡û
>C161040701
CP012269
Bacillota
Pediococcus damnosus TMW 2.1532 [CP012269]
136970
136896
-
Phe
GAA
-
¡û
>C161040715
CP012275
Bacillota
Pediococcus damnosus TMW 2.1533 [CP012275]
48434
48508
+
Phe
GAA
-
¡û
>C161040821
CP012283
Bacillota
Pediococcus damnosus TMW 2.1534 [CP012283]
136972
136898
-
Phe
GAA
-
¡û
>C161040881
CP012288
Bacillota
Pediococcus damnosus TMW 2.1535 [CP012288]
196876
196802
-
Phe
GAA
[Ensembl]
¡û
>C161040941
CP012294
Bacillota
Pediococcus damnosus TMW 2.1536 [CP012294]
185917
185843
-
Phe
GAA
-
¡û
>C161072160
CP014449
Bacillota
Enterococcus faecium ATCC 700221 [CP014449]
937546
937621
+
Phe
GAA
-
¡û
>W121120687
ALZM01000110
Bacillota
Enterococcus faecalis ERV25 [ALZM]
18163
18091
-
Phe
GAA
[ENA]
¡û
>W1610044008
BBAF01000002
Bacillota
Fructilactobacillus lindneri DSM 20690 = JCM 11027 [BBAF]
245518
245446
-
Phe
GAA
[ENA]
¡û
>W1610066834
BCQC01000001
Bacillota
Enterococcus faecalis NBRC 100480 [BCQC]
471066
470994
-
Phe
GAA
[ENA]
¡û
>W1610461984
FKLL01000081
Bacillota
Enterococcus faecium [FKLL]
631
706
+
Phe
GAA
[ENA]
¡û
>W1610528304
JQBC01000016
Bacillota
Pediococcus inopinatus [JQBC]
408
482
+
Phe
GAA
[ENA]
¡û
>W1610528367
JQBD01000161
Bacillota
Pediococcus damnosus [JQBD]
923
849
-
Phe
GAA
[ENA]
¡û
>W1610529020
JQBT01000032
Bacillota
Fructilactobacillus lindneri DSM 20690 = JCM 11027 [JQBT]
245656
245584
-
Phe
GAA
[ENA]
¡û
>W1610761536
LNLL01000122
Bacillota
Enterococcus faecium [LNLL]
965
1040
+
Phe
GAA
[ENA]
¡û
>W1610761672
LNLN01000150
Bacillota
Enterococcus faecium [LNLN]
257
332
+
Phe
GAA
[ENA]
¡û
>W1610761688
LNLN01000196
Bacillota
Enterococcus faecium [LNLN]
947
1022
+
Phe
GAA
[ENA]
¡û
>W1610762799
LNMC01000006
Bacillota
Enterococcus faecium [LNMC]
6291
6216
-
Phe
GAA
[ENA]
¡û
>W1610762910
LNMD01000227
Bacillota
Enterococcus faecium [LNMD]
4728
4803
+
Phe
GAA
[ENA]
¡û
>W1610763161
LNMG01000069
Bacillota
Enterococcus faecium [LNMG]
33744
33819
+
Phe
GAA
[ENA]
¡û
>W1610763431
LNMJ01000134
Bacillota
Enterococcus faecium [LNMJ]
10672
10597
-
Phe
GAA
[ENA]
¡û
>W1610764120
LNMS01000132
Bacillota
Enterococcus faecium [LNMS]
48615
48690
+
Phe
GAA
[ENA]
¡û
>W1610766555
LNOW01000079
Bacillota
Enterococcus faecium [LNOW]
317
242
-
Phe
GAA
[ENA]
¡û
>W1610850305
LQAM01000009
Bacillota
Enterococcus faecalis [LQAM]
465058
465130
+
Phe
GAA
[ENA]
¡û
>W1610872513
LRAZ01000167
Bacillota
Enterococcus faecium [LRAZ]
439
514
+
Phe
GAA
[ENA]
¡û
>W1610872541
LRBA01000090
Bacillota
Enterococcus faecium [LRBA]
439
514
+
Phe
GAA
[ENA]
¡û
>W1710041168
BBAF01000002
Bacillota
Fructilactobacillus lindneri DSM 20690 = JCM 11027 [BBAF]
245518
245446
-
Phe
GAA
[ENA]
¡û
>W1710064265
BCQC01000001
Bacillota
Enterococcus faecalis NBRC 100480 [BCQC]
471066
470994
-
Phe
GAA
[ENA]
¡û
>W1710461199
FKLL01000081
Bacillota
Enterococcus faecium [FKLL]
631
706
+
Phe
GAA
[ENA]
¡û
>W1710601817
FUXS01000001
Bacillota
Fructilactobacillus lindneri DSM 20690 = JCM 11027 [FUXS]
225761
225833
+
Phe
GAA
[ENA]
¡û
>W1710629894
JQBC01000016
Bacillota
Pediococcus inopinatus [JQBC]
408
482
+
Phe
GAA
[ENA]
¡û
>W1710629957
JQBD01000161
Bacillota
Pediococcus damnosus [JQBD]
923
849
-
Phe
GAA
[ENA]
¡û
>W1710630610
JQBT01000032
Bacillota
Fructilactobacillus lindneri DSM 20690 = JCM 11027 [JQBT]
245656
245584
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK