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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237362 (18 seq.)
>W131228399
AUFX01000003
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
643799
643726
-
Thr
TGT
[ENA]
¡û
>WENV180111233
OAPN01044317
[OAPN] marine metagenome; 2011
126
199
+
Thr
TGT
[ENA]
¢þ
>WENV180292621
OBIV01538726
[OBIV] soil metagenome; Clay
108
35
-
Thr
TGT
[ENA]
¢þ
>W1511590308
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
263209
263282
+
Thr
TGT
[ENA]
¡û
>W1511590311
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
263549
263624
+
Thr
TGT
[ENA]
¡û
>W1511590314
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
263853
263928
+
Thr
TGT
[ENA]
¡û
>W1511590398
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2229565
2229490
-
Thr
TGT
[ENA]
¡û
>W1511590401
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2229184
2229109
-
Thr
TGT
[ENA]
¡û
>W1511590408
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2228214
2228141
-
Thr
TGT
[ENA]
¡û
>W1511590412
LBGV01000001
Bacteroidota
Persicobacter sp. CCB-QB2 [LBGV]
2227674
2227599
-
Thr
TGT
[ENA]
¡û
>C161046288
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1452643
1452718
+
Thr
TGT
-
¡û
>C161046291
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1452983
1453058
+
Thr
TGT
-
¡û
>C161046294
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
1453288
1453363
+
Thr
TGT
-
¡û
>C161046322
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3344741
3344666
-
Thr
TGT
-
¡û
>C161046325
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3344363
3344288
-
Thr
TGT
-
¡û
>C161046332
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3343494
3343421
-
Thr
TGT
-
¡û
>C161046336
CP012851
Bacteroidota
Persicobacter sp. JZB09 [CP012851]
3342990
3342915
-
Thr
TGT
-
¡û
>W121084778
AKIS01000086
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
2853
2926
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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