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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237376 (20 seq.)
>W131052673
AMZF01000010
Betaproteobacteria
Pusillimonas noertemannii BS8 [AMZF]
19468
19393
-
Thr
TGT
[ENA]
¡û
>W1712110578
NJIX01000004
Betaproteobacteria
Achromobacter sp. HZ34 [NJIX]
214314
214239
-
Thr
TGT
[ENA]
¡û
>W1712110608
NJIY01000003
Betaproteobacteria
Achromobacter sp. HZ28 [NJIY]
214314
214239
-
Thr
TGT
[ENA]
¡û
>C171016575
CP012334
Betaproteobacteria
Bordetella sp. H567 [CP012334]
136012
136087
+
Thr
TGT
-
¡û
>C171115767
CP021108
Betaproteobacteria
Bordetella genomosp. 8 AU19157 [CP021108]
165810
165735
-
Thr
TGT
-
¡û
>C171115814
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
89669
89594
-
Thr
TGT
-
¡û
>C171115861
CP021110
Betaproteobacteria
Bordetella genomosp. 9 AU14267 [CP021110]
89665
89590
-
Thr
TGT
-
¡û
>WENV181171558
OEIV010266024
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
310
385
+
Thr
TGT
[ENA]
¢þ
>WENV170661738
JXWV01103454
[JXWV] soil metagenome; rice field; organic FYM Plot
487
412
-
Thr
TGT
[ENA]
¢þ
>W1910890612
NEVJ01000003
Betaproteobacteria
Bordetella genomosp. 9 9 AU21707 [NEVJ]
3628831
3628756
-
Thr
TGT
[ENA]
¡û
>W1910890760
NEVM01000001
Betaproteobacteria
Bordetella genomosp. 10 10 AU16122 [NEVM]
11378
11303
-
Thr
TGT
[ENA]
¡û
>W1910891064
NEVS01000001
Betaproteobacteria
Bordetella genomosp. 11 11 AU8856 [NEVS]
155108
155033
-
Thr
TGT
[ENA]
¡û
>W1911641128
PYAL01000003
Betaproteobacteria
Achromobacter aloeverae AVA-1 [PYAL]
112259
112184
-
Thr
TGT
[ENA]
¡û
>W1810063553
PDUW01000001
Betaproteobacteria
Pusillimonas caeni KCTC 42353 [PDUW]
693913
693988
+
Thr
TGT
[ENA]
¡û
>W1810063613
PDUX01000002
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [PDUX]
53087
53012
-
Thr
TGT
[ENA]
¡û
>W1810573184
QEKO01000002
Betaproteobacteria
Pusillimonas noertemannii DSM 10065 [QEKO]
828196
828271
+
Thr
TGT
[ENA]
¡û
>C161051086
CP013111
Betaproteobacteria
Bordetella sp. N [CP013111]
5461034
5460959
-
Thr
TGT
[Ensembl]
¡û
>C161094193
CP016170
Betaproteobacteria
Bordetella bronchialis AU3182 [CP016170]
172023
171948
-
Thr
TGT
-
¡û
>C161094240
CP016171
Betaproteobacteria
Bordetella bronchialis AU17976 [CP016171]
170313
170238
-
Thr
TGT
[Ensembl]
¡û
>C161094287
CP016172
Betaproteobacteria
Bordetella flabilis AU10664 [CP016172]
130133
130058
-
Thr
TGT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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