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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237439 (63 seq.)
>W1710862253
LMEG01000001
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
478150
478225
+
Lys
CTT
[ENA]
¡û
>W1710862254
LMEG01000001
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
477149
477074
-
Lys
CTT
[ENA]
¡û
>W1710877615
LMQG01000012
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
333528
333603
+
Lys
CTT
[ENA]
¡û
>W1711116201
LUAV01000011
Alphaproteobacteria
Ensifer aridi [LUAV]
125124
125049
-
Lys
CTT
[ENA]
¡û
>W1711407997
MGLN01000070
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
18180
18105
-
Lys
CTT
[ENA]
¡û
>W1711501749
MKRY01000342
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
5677
5602
-
Lys
CTT
[ENA]
¡û
>W1711718112
MTHE01000006
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
127663
127588
-
Lys
CTT
[ENA]
¡û
>W1712106172
NIVP01000003
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
225104
225029
-
Lys
CTT
[ENA]
¡û
>C171020995
CP013107
Alphaproteobacteria
Sinorhizobium americanum CFNEI 73 [CP013107]
2274808
2274883
+
Lys
CTT
-
¡û
>C171117273
CP021219
Alphaproteobacteria
Sinorhizobium meliloti RU11/001 [CP021219]
2804608
2804683
+
Lys
CTT
-
¡û
>C171123389
CP021797
Alphaproteobacteria
Sinorhizobium meliloti USDA1106 [CP021797]
3132010
3132085
+
Lys
CTT
-
¡û
>C171123672
CP021818
Alphaproteobacteria
Sinorhizobium meliloti M162 [CP021818]
2414835
2414760
-
Lys
CTT
-
¡û
>W131218245
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
813297
813372
+
Lys
CTT
[ENA]
¡û
>W141043022
AMFA01000127
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
76165
76240
+
Lys
CTT
[ENA]
¡û
>WENV181167837
OEIU01085571
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
474
549
+
Lys
CTT
[ENA]
¢þ
>WENV181223402
OFDC01011644
[OFDC] hot springs metagenome; Water
2291
2366
+
Lys
CTT
[ENA]
¢þ
>WENV181227323
OFDN01006314
[OFDN] hot springs metagenome; Water
3572
3647
+
Lys
CTT
[ENA]
¢þ
>WENV181402414
OFTY01001274
[OFTY] sludge metagenome; sludge
10293
10368
+
Lys
CTT
[ENA]
¢þ
>WENV181732614
OGQD01073325
[OGQD] human gut metagenome; faeces
391
466
+
Lys
CTT
[ENA]
¢þ
>WENV183727722
PJTP01000098
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
698
623
-
Lys
CTT
[ENA]
¢þ
>WENV183728448
PJTQ01000057
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
76380
76455
+
Lys
CTT
[ENA]
¢þ
>WENV183730923
PJTS01002084
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
4207
4282
+
Lys
CTT
[ENA]
¢þ
>WENV183733708
PJTY01013692
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
477
552
+
Lys
CTT
[ENA]
¢þ
>WENV183735439
PJUB01000004
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
379699
379624
-
Lys
CTT
[ENA]
¢þ
>WENV183739202
PJUE01003087
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2700
2625
-
Lys
CTT
[ENA]
¢þ
>WENV183740319
PJUF01001156
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
10913
10988
+
Lys
CTT
[ENA]
¢þ
>WENV170010337
APMI01014236
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
8421
8346
-
Lys
CTT
[ENA]
¢þ
>WENV170011284
APMI01053968
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1932
1857
-
Lys
CTT
[ENA]
¢þ
>WENV170012003
APMI01109444
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
467
392
-
Lys
CTT
[ENA]
¢þ
>WENV170574542
FLYM01056187
[FLYM] hot springs metagenome; Sediment
405
480
+
Lys
CTT
[ENA]
¢þ
>WENV170646023
JQGF01009021
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
268
343
+
Lys
CTT
[ENA]
¢þ
>WENV170658952
JUGB01001554
[JUGB] scorpion gut metagenome; ten pooled guts of food-deprived Vaejovis mexicanus smith and Centruroides limpidus
1107
1032
-
Lys
CTT
[ENA]
¢þ
>WENV170784090
MCHG01000011
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
156882
156807
-
Lys
CTT
[ENA]
¢þ
>WENV170839510
MDSZ01186788
[MDSZ] marine metagenome; seawater
79533
79458
-
Lys
CTT
[ENA]
¢þ
>C191094019
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
1992188
1992113
-
Lys
CTT
-
¡û
>C191134437
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
3188058
3188133
+
Lys
CTT
-
¡û
>C191157415
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
421486
421411
-
Lys
CTT
-
¡û
>C191166128
CP039435
Alphaproteobacteria
Brevundimonas sp. SGAir0440 [CP039435]
1821728
1821653
-
Lys
CTT
-
¡û
>C191189148
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
1085433
1085358
-
Lys
CTT
-
¡û
>C191220456
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
909750
909675
-
Lys
CTT
-
¡û
>W141551949
JHOF01000026
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
90163
90088
-
Lys
CTT
[ENA]
¡û
>W1910182669
BJNC01000002
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
57695
57770
+
Lys
CTT
[ENA]
¡û
>W1910374323
FUIE01000036
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
106383
106458
+
Lys
CTT
[ENA]
¡û
>W1911566740
PCPB01000003
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
254836
254761
-
Lys
CTT
[ENA]
¡û
>W1911566954
PCPF01000010
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
117666
117591
-
Lys
CTT
[ENA]
¡û
>W1911567189
PCPK01000003
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
19041
19116
+
Lys
CTT
[ENA]
¡û
>W1911567285
PCPM01000008
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
19029
19104
+
Lys
CTT
[ENA]
¡û
>W1911567380
PCPO01000003
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
117693
117618
-
Lys
CTT
[ENA]
¡û
>W1911760349
QWTZ01000006
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
78183
78258
+
Lys
CTT
[ENA]
¡û
>W1810693162
QLLC01000015
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
41962
41887
-
Lys
CTT
[ENA]
¡û
>WENV040564
AACY022092635
Marine microbial communities from Global Ocean Sampling (GOS)
365
288
-
Lys
CTT
[ENA]
>W11123443
ADUI01000156
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
6500
6575
+
Lys
CTT
[ENA]
¡û
>W1511547884
JZRG01000018
Alphaproteobacteria
Brevundimonas sp. KM4 [JZRG]
150828
150903
+
Lys
CTT
[ENA]
¡û
>W1511596047
LBNT01000003
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
121523
121598
+
Lys
CTT
[ENA]
¡û
>C161047068
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2008745
2008670
-
Lys
CTT
[Ensembl]
¡û
>C161089818
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1717940
1718015
+
Lys
CTT
[Ensembl]
¡û
>W121066153
AJQP01000072
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83622 [AJQP]
34882
34957
+
Lys
CTT
[ENA]
¡û
>W121066269
AJQR01000263
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83666 [AJQR]
12204
12129
-
Lys
CTT
[ENA]
¡û
>W121066289
AJQS01000026
Alphaproteobacteria
Sinorhizobium fredii CCBAU 83753 [AJQS]
37346
37271
-
Lys
CTT
[ENA]
¡û
>W1610724599
LMEG01000001
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
478150
478225
+
Lys
CTT
[ENA]
¡û
>W1610724600
LMEG01000001
Alphaproteobacteria
Ensifer sp. Root423 [LMEG]
477149
477074
-
Lys
CTT
[ENA]
¡û
>W1610739961
LMQG01000012
Alphaproteobacteria
Rhizobium sp. Leaf391 [LMQG]
333528
333603
+
Lys
CTT
[ENA]
¡û
>W1710084605
BDMM01000001
Alphaproteobacteria
Brevundimonas sp. SH203 [BDMM]
366354
366429
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK