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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237457 (29 seq.)
>W1710822426
LKUW01000048
Betaproteobacteria
Paracidovorax citrulli [LKUW]
27704
27779
+
Thr
TGT
[ENA]
¡û
>W1710875993
LMOV01000025
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
177037
176962
-
Thr
TGT
[ENA]
¡û
>W1712096695
NIAZ01000002
Betaproteobacteria
Acidovorax sp. T1m [NIAZ]
123561
123486
-
Thr
TGT
[ENA]
¡û
>C171118067
CP021359
Betaproteobacteria
Acidovorax carolinensis NA2 [CP021359]
3224668
3224593
-
Thr
TGT
-
¡û
>C171120920
CP021648
Betaproteobacteria
Acidovorax sp. T1 [CP021648]
811802
811877
+
Thr
TGT
-
¡û
>W131045651
AMRP01000220
Betaproteobacteria
Paracidovorax citrulli ZJU1106 [AMRP]
120
195
+
Thr
TGT
[ENA]
¡û
>C000134
CP000512
Betaproteobacteria
Paracidovorax citrulli AAC00-1 [CP000512]
4069843
4069768
-
Thr
TGT
[Ensembl]
¡û
>WENV181364870
OFPE01008266
[OFPE] sediment metagenome; Lake sediment
402
477
+
Thr
TGT
[ENA]
¢þ
>WENV183729456
PJTQ01041941
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
157
232
+
Thr
TGT
[ENA]
¢þ
>WENV170706632
LNAP01004930
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1273
1348
+
Thr
TGT
[ENA]
¢þ
>C181088996
CP023687
Betaproteobacteria
Paracidovorax citrulli KACC17005 [CP023687]
1452601
1452526
-
Thr
TGT
-
¡û
>W09106096
AASX01000020
Betaproteobacteria
Paracidovorax citrulli subsp. citrulli AAC00-1 [AASX]
31844
31769
-
Thr
TGT
[ENA]
¡û
>C191063806
CP029373
Betaproteobacteria
Paracidovorax citrulli M6 [CP029373]
816111
816036
-
Thr
TGT
-
¡û
>W141701627
JMKU01000009
Betaproteobacteria
Paracidovorax oryzae ATCC 19882 [JMKU]
85441
85516
+
Thr
TGT
[ENA]
¡û
>W1810573165
QEKN01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5684 [QEKN]
1049466
1049391
-
Thr
TGT
[ENA]
¡û
>W1810885117
QUNC01000001
Betaproteobacteria
Paracidovorax citrulli AAC00-1 #5596 [QUNC]
484634
484709
+
Thr
TGT
[ENA]
¡û
>W10110555
ADCB01000026
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
10879
10954
+
Thr
TGT
[ENA]
¡û
>C11100160
CP002521
Betaproteobacteria
Paracidovorax avenae ATCC 19860 [CP002521]
4085627
4085552
-
Thr
TGT
[Ensembl]
¡û
>W11112992
ADCB01000026
Betaproteobacteria
Paracidovorax avenae subsp. avenae ATCC 19860 [ADCB]
10879
10954
+
Thr
TGT
[ENA]
¡û
>W1511503082
JXDJ01000026
Betaproteobacteria
Paracidovorax citrulli tw6 [JXDJ]
96033
96108
+
Thr
TGT
[ENA]
¡û
>W1511527418
JYHM01000016
Betaproteobacteria
Paracidovorax citrulli pslbtw65 [JYHM]
67138
67063
-
Thr
TGT
[ENA]
¡û
>W11170767
AFPT01000097
Betaproteobacteria
Paracidovorax oryzae subsp. avenae RS-1 [AFPT]
74756
74681
-
Thr
TGT
[ENA]
¡û
>W1610686291
LKUW01000048
Betaproteobacteria
Paracidovorax citrulli [LKUW]
27704
27779
+
Thr
TGT
[ENA]
¡û
>W1610738339
LMOV01000025
Betaproteobacteria
Acidovorax sp. Leaf160 [LMOV]
177037
176962
-
Thr
TGT
[ENA]
¡û
>W1710512060
FMZC01000003
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
156573
156498
-
Thr
TGT
[ENA]
¡û
>W1710519737
FNEY01000030
Betaproteobacteria
Paracidovorax citrulli [FNEY]
28092
28167
+
Thr
TGT
[ENA]
¡û
>W1710525292
FNJL01000002
Betaproteobacteria
Paracidovorax cattleyae [FNJL]
92002
92077
+
Thr
TGT
[ENA]
¡û
>W1710559431
FOMQ01000002
Betaproteobacteria
Paracidovorax konjaci [FOMQ]
426856
426931
+
Thr
TGT
[ENA]
¡û
>W1710561151
FONX01000025
Betaproteobacteria
Paracidovorax wautersii [FONX]
16438
16513
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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