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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237506 (90 seq.)
>W1710860229
LMCS01000002
Actinomycetota
Microbacterium sp. Root322 [LMCS]
139737
139810
+
Leu
TAA
[ENA]
¡û
>W1710863947
LMFN01000001
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
141422
141495
+
Leu
TAA
[ENA]
¡û
>W1710864533
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
1823168
1823095
-
Leu
TAA
[ENA]
¡û
>W1710868858
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
84204
84131
-
Leu
TAA
[ENA]
¡û
>W1710875113
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
295425
295350
-
Leu
TAA
[ENA]
¡û
>W1710875917
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
1182980
1183055
+
Leu
TAA
[ENA]
¡û
>W1710876012
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
2463347
2463274
-
Leu
TAA
[ENA]
¡û
>W1710876569
LMPI01000012
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
33017
32944
-
Leu
TAA
[ENA]
¡û
>W1710876672
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
31223
31150
-
Leu
TAA
[ENA]
¡û
>W1710947751
LOSO01000004
Actinomycetota
Microbacterium sp. CH1 [LOSO]
71041
70966
-
Leu
TAA
[ENA]
¡û
>W131036167
AKVP01000051
Actinomycetota
Microbacterium barkeri 2011-R4 [AKVP]
14778
14853
+
Leu
TAA
[ENA]
¡û
>W131098931
AOSO01000001
Actinomycetota
Microbacterium sp. UCD-TDU [AOSO]
137840
137913
+
Leu
TAA
[ENA]
¡û
>W1711074817
LSJW01000198
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
17115
17190
+
Leu
TAA
[ENA]
¡û
>W1711082389
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
639105
639178
+
Leu
TAA
[ENA]
¡û
>W1711173369
LWCU01000054
Actinomycetota
Microbacterium sp. H83 [LWCU]
87048
87121
+
Leu
TAA
[ENA]
¡û
>W131226619
AUEM01000010
Actinomycetota
Microbacterium sp. URHA0036 [AUEM]
69442
69367
-
Leu
TAA
[ENA]
¡û
>W1711386943
MEGA01000027
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
24708
24781
+
Leu
TAA
[ENA]
¡û
>W1711502193
MKSL01000011
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
294815
294888
+
Leu
TAA
[ENA]
¡û
>W1711589061
MODW01000002
Actinomycetota
Microbacterium sp. LCT-H2 [MODW]
66880
66805
-
Leu
TAA
[ENA]
¡û
>W1711963136
NCTV01000033
Actinomycetota
Microbacterium sp. LEMMJ01 [NCTV]
112203
112278
+
Leu
TAA
[ENA]
¡û
>C171073940
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
1131158
1131085
-
Leu
TAA
-
¡û
>W141075421
ATAO01000179
Actinomycetota
Microbacterium liquefaciens MF109 [ATAO]
39927
39854
-
Leu
TAA
[ENA]
¡û
>W141187503
AYME01000004
Actinomycetota
Microbacterium paraoxydans DH1b [AYME]
233494
233419
-
Leu
TAA
[ENA]
¡û
>W141289427
JARC01000043
Actinomycetota
Microbacterium sp. Cr-K29 [JARC]
120303
120376
+
Leu
TAA
[ENA]
¡û
>W141289461
JARD01000022
Actinomycetota
Microbacterium sp. Cr-K32 [JARD]
98346
98273
-
Leu
TAA
[ENA]
¡û
>W141289506
JARE01000060
Actinomycetota
Microbacterium sp. Cr-K20 [JARE]
75483
75556
+
Leu
TAA
[ENA]
¡û
>W141289544
JARF01000033
Actinomycetota
Microbacterium sp. Cr-K1W [JARF]
75637
75710
+
Leu
TAA
[ENA]
¡û
>WENV183735245
PJUA01005480
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
806
733
-
Leu
TAA
[ENA]
¢þ
>WENV183736267
PJUC01000366
[PJUC] soil metagenome; Soil enriched on filter paper
1645
1572
-
Leu
TAA
[ENA]
¢þ
>C181004084
AP017975
Actinomycetota
Microbacterium sp. TPU 3598 [AP017975]
2520751
2520824
+
Leu
TAA
-
¡û
>C181153118
CP027434
Actinomycetota
Microbacterium sp. str. 'China' [CP027434]
1122571
1122497
-
Leu
TAA
-
¡û
>C181200453
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
1184687
1184614
-
Leu
TAA
-
¡û
>C191026893
CP024170
Actinomycetota
Microbacterium sp. Y-01 [CP024170]
1202139
1202065
-
Leu
TAA
-
¡û
>C191074608
CP031338
Actinomycetota
Microbacterium oxydans VIU2A [CP031338]
2568507
2568580
+
Leu
TAA
-
¡û
>C191074851
CP031422
Actinomycetota
Microbacterium oxydans HG3 [CP031422]
2611273
2611347
+
Leu
TAA
-
¡û
>C191185993
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
1162944
1162871
-
Leu
TAA
-
¡û
>W1910182581
BJNA01000007
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
45717
45790
+
Leu
TAA
[ENA]
¡û
>W1910183348
BJNQ01000010
Actinomycetota
Microbacterium liquefaciens NBRC 15037 [BJNQ]
174401
174474
+
Leu
TAA
[ENA]
¡û
>W1910184023
BJOG01000003
Actinomycetota
Microbacterium oxydans NBRC 15586 [BJOG]
5825
5751
-
Leu
TAA
[ENA]
¡û
>W1910211976
FMIR01000017
Actinomycetota
Microbacterium oxydans [FMIR]
432674
432747
+
Leu
TAA
[ENA]
¡û
>W1910636823
LPVV01000034
Actinomycetota
Microbacterium sp. SZ1 [LPVV]
54634
54709
+
Leu
TAA
[ENA]
¡û
>W1911566599
PCOY01000004
Actinomycetota
Microbacterium sp. MYb62 [PCOY]
217659
217586
-
Leu
TAA
[ENA]
¡û
>W1911566696
PCPA01000003
Actinomycetota
Microbacterium sp. MYb54 [PCPA]
235161
235086
-
Leu
TAA
[ENA]
¡û
>W1911566848
PCPD01000007
Actinomycetota
Microbacterium sp. MYb50 [PCPD]
53752
53827
+
Leu
TAA
[ENA]
¡û
>W1911567001
PCPG01000001
Actinomycetota
Microbacterium sp. MYb45 [PCPG]
82780
82707
-
Leu
TAA
[ENA]
¡û
>W1911567119
PCPI01000007
Actinomycetota
Microbacterium sp. MYb43 [PCPI]
53602
53677
+
Leu
TAA
[ENA]
¡û
>W1911567170
PCPJ01000018
Actinomycetota
Microbacterium sp. MYb40 [PCPJ]
53152
53227
+
Leu
TAA
[ENA]
¡û
>W1911567246
PCPL01000004
Actinomycetota
Microbacterium sp. MYb32 [PCPL]
53752
53827
+
Leu
TAA
[ENA]
¡û
>W1911567519
PCPQ01000003
Actinomycetota
Microbacterium sp. MYb24 [PCPQ]
235164
235089
-
Leu
TAA
[ENA]
¡û
>W1911594707
PNFU01000001
Actinomycetota
Microbacterium sp. UMB0228 [PNFU]
513138
513064
-
Leu
TAA
[ENA]
¡û
>W1810091053
PGGU01000006
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
151512
151586
+
Leu
TAA
[ENA]
¡û
>W1810538516
QDFV01000010
Actinomycetota
Microbacterium sp. TPD7012 [QDFV]
61008
60935
-
Leu
TAA
[ENA]
¡û
>W1810570335
QEIJ01000001
Actinomycetota
Microbacterium sp. Gd 4-13 [QEIJ]
288103
288176
+
Leu
TAA
[ENA]
¡û
>W1810724688
QOAY01000262
Actinomycetota
Microbacterium sp. H6 [QOAY]
1173
1099
-
Leu
TAA
[ENA]
¡û
>C151093276
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
153634
153561
-
Leu
TAA
-
¡û
>W1510085898
CDWI01000011
Actinomycetota
Microbacterium sp. 3J1 [CDWI]
350143
350070
-
Leu
TAA
[ENA]
¡û
>W1511348044
JRKC01000054
Actinomycetota
Microbacterium sp. ZOR0019 [JRKC]
50503
50428
-
Leu
TAA
[ENA]
¡û
>W1511432632
JUGQ01000003
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
126471
126546
+
Leu
TAA
[ENA]
¡û
>W1511509292
JXQX01000038
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
512695
512768
+
Leu
TAA
[ENA]
¡û
>W1511510239
JXRU01000036
Actinomycetota
Microbacterium sp. SA39 [JXRU]
59004
58929
-
Leu
TAA
[ENA]
¡û
>W1511528731
JYIU01000046
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
735156
735229
+
Leu
TAA
[ENA]
¡û
>W1511528744
JYIV01000018
Actinomycetota
Microbacterium oxydans BEL163 [JYIV]
31446
31373
-
Leu
TAA
[ENA]
¡û
>W1511528815
JYIW01000026
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
1114819
1114892
+
Leu
TAA
[ENA]
¡û
>W1511528909
JYIY01000080
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
121512
121585
+
Leu
TAA
[ENA]
¡û
>W1511528912
JYIY01000080
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
217957
217884
-
Leu
TAA
[ENA]
¡û
>W1511588890
LBCR01000034
Actinomycetota
Microbacterium sp. Ag1 [LBCR]
262072
262147
+
Leu
TAA
[ENA]
¡û
>C161070835
CP014313
Actinomycetota
Microbacterium sp. PAMC 28756 HSR44 [CP014313]
2477899
2477824
-
Leu
TAA
[Ensembl]
¡û
>W1610068314
BCRF01000056
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
15249
15324
+
Leu
TAA
[ENA]
¡û
>W1610068400
BCRH01000147
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
392
317
-
Leu
TAA
[ENA]
¡û
>W1610081058
BDCY01000002
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
658095
658022
-
Leu
TAA
[ENA]
¡û
>W1610590735
LDRQ01000039
Actinomycetota
Microbacterium oxydans [LDRQ]
28330
28255
-
Leu
TAA
[ENA]
¡û
>W1610722575
LMCS01000002
Actinomycetota
Microbacterium sp. Root322 [LMCS]
139737
139810
+
Leu
TAA
[ENA]
¡û
>W1610726293
LMFN01000001
Actinomycetota
Microbacterium sp. Root1433D1 [LMFN]
141422
141495
+
Leu
TAA
[ENA]
¡û
>W1610726879
LMFY01000001
Actinomycetota
Microbacterium sp. Root553 [LMFY]
1823168
1823095
-
Leu
TAA
[ENA]
¡û
>W1610731204
LMJK01000002
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
84204
84131
-
Leu
TAA
[ENA]
¡û
>W1610737459
LMOD01000001
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
295425
295350
-
Leu
TAA
[ENA]
¡û
>W1610738263
LMOU01000001
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
1182980
1183055
+
Leu
TAA
[ENA]
¡û
>W1610738358
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
2463347
2463274
-
Leu
TAA
[ENA]
¡û
>W1610738915
LMPI01000012
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
33017
32944
-
Leu
TAA
[ENA]
¡û
>W1610739018
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
31223
31150
-
Leu
TAA
[ENA]
¡û
>W1610803753
LOSO01000004
Actinomycetota
Microbacterium sp. CH1 [LOSO]
71041
70966
-
Leu
TAA
[ENA]
¡û
>W1610914122
LSJW01000198
Actinomycetota
Microbacterium sp. CCH5-D1 [LSJW]
17115
17190
+
Leu
TAA
[ENA]
¡û
>W1610921174
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
639105
639178
+
Leu
TAA
[ENA]
¡û
>W1610981974
LWCU01000054
Actinomycetota
Microbacterium sp. H83 [LWCU]
87048
87121
+
Leu
TAA
[ENA]
¡û
>W1710065687
BCRF01000056
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
15249
15324
+
Leu
TAA
[ENA]
¡û
>W1710065773
BCRH01000147
Actinomycetota
Microbacterium paraoxydans NBRC 103076 [BCRH]
392
317
-
Leu
TAA
[ENA]
¡û
>W1710079709
BDCY01000002
Actinomycetota
Microbacterium sp. HM58-2 [BDCY]
658095
658022
-
Leu
TAA
[ENA]
¡û
>W1710526717
FNKN01000001
Actinomycetota
Microbacterium sp. cf332 [FNKN]
107798
107873
+
Leu
TAA
[ENA]
¡û
>W1710535584
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
2670429
2670504
+
Leu
TAA
[ENA]
¡û
>W1710710015
LDRQ01000039
Actinomycetota
Microbacterium oxydans [LDRQ]
28330
28255
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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