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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237550 (63 seq.)
>W1710860806
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
628531
628456
-
Arg
CCT
[ENA]
¡û
>W1710863695
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
701897
701970
+
Arg
CCT
[ENA]
¡û
>W1710864936
LMGG01000007
Actinomycetota
Nocardioides sp. Root151 [LMGG]
300837
300764
-
Arg
CCT
[ENA]
¡û
>W1710865648
LMGV01000007
Actinomycetota
Nocardioides sp. Root614 [LMGV]
281715
281640
-
Arg
CCT
[ENA]
¡û
>W1710866346
LMHJ01000003
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
281832
281757
-
Arg
CCT
[ENA]
¡û
>W1710867106
LMIA01000001
Actinomycetota
Nocardioides sp. Root190 [LMIA]
146691
146766
+
Arg
CCT
[ENA]
¡û
>W1710867815
LMIP01000010
Actinomycetota
Nocardioides sp. Root79 [LMIP]
46785
46860
+
Arg
CCT
[ENA]
¡û
>W1710868023
LMIT01000011
Actinomycetota
Nocardioides sp. Root240 [LMIT]
46764
46839
+
Arg
CCT
[ENA]
¡û
>W1710874090
LMNH01000006
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
12470
12395
-
Arg
CCT
[ENA]
¡û
>W1710874873
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1202545
1202620
+
Arg
CCT
[ENA]
¡û
>W1710880640
LMSM01000001
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
219925
219850
-
Arg
CCT
[ENA]
¡û
>W1710880704
LMSN01000015
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
313195
313122
-
Arg
CCT
[ENA]
¡û
>W1710880895
LMSQ01000019
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
545836
545909
+
Arg
CCT
[ENA]
¡û
>W1710880937
LMSR01000016
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
410494
410419
-
Arg
CCT
[ENA]
¡û
>W1710881053
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1315523
1315598
+
Arg
CCT
[ENA]
¡û
>W131190809
ASEP01000107
Actinomycetota
Nocardioides sp. CF8 [ASEP]
25578
25503
-
Arg
CCT
[ENA]
¡û
>WENV180690735
OCZS010020892
[OCZS] soil metagenome; soil
2213
2139
-
Arg
CCT
[ENA]
¢þ
>WENV181223130
OFDC01002117
[OFDC] hot springs metagenome; Water
6455
6380
-
Arg
CCT
[ENA]
¢þ
>W141277554
JAER01000024
Actinomycetota
Nocardioides sp. J54 [JAER]
12088
12013
-
Arg
CCT
[ENA]
¡û
>WENV183062535
OLID01033368
[OLID] seawater metagenome; Sea water
276
350
+
Arg
CCT
[ENA]
¢þ
>WENV170660859
JXWU01048360
[JXWU] soil metagenome; rice field; organic control Plot
257
182
-
Arg
CCT
[ENA]
¢þ
>C181119578
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
3102965
3102890
-
Arg
CCT
-
¡û
>C191132709
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
2807903
2807828
-
Arg
CCT
-
¡û
>C191159468
CP038436
Actinomycetota
Nocardioides seonyuensis MMS17-SY207-3 [CP038436]
2350381
2350306
-
Arg
CCT
-
¡û
>C191159927
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
3006134
3006059
-
Arg
CCT
-
¡û
>C191182487
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
2989862
2989787
-
Arg
CCT
-
¡û
>C191186986
CP041146
Actinomycetota
Nocardioides humi DCY24 [CP041146]
1954207
1954280
+
Arg
CCT
-
¡û
>W1910141226
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
567139
567213
+
Arg
CCT
[ENA]
¡û
>W1911798440
QYRP01000002
Actinomycetota
Nocardioides cavernaquae K1W22B-1 [QYRP]
1892490
1892415
-
Arg
CCT
[ENA]
¡û
>W1810157313
PJBV01000035
Actinomycetota
Nocardioides alpinus DSM 23325 [PJBV]
629243
629318
+
Arg
CCT
[ENA]
¡û
>W1810201569
POAG01000010
Actinomycetota
Nocardioides sp. 616 [POAG]
132460
132385
-
Arg
CCT
[ENA]
¡û
>W1810427490
PYXZ01000001
Actinomycetota
Nocardioides currus IB-3 [PYXZ]
400959
401034
+
Arg
CCT
[ENA]
¡û
>W1810462607
PZYX01000001
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
319841
319766
-
Arg
CCT
[ENA]
¡û
>W1810462653
PZYY01000001
Actinomycetota
Nocardioides terrigena KCTC 19217 [PZYY]
468437
468364
-
Arg
CCT
[ENA]
¡û
>W1810504003
QBKO01000012
Actinomycetota
Nocardioides sp. CF167 [QBKO]
40776
40851
+
Arg
CCT
[ENA]
¡û
>W1810626192
QHKX01000003
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
795585
795510
-
Arg
CCT
[ENA]
¡û
>W1810626242
QHKY01000003
Actinomycetota
Nocardioides gilvus XZ17 [QHKY]
264397
264324
-
Arg
CCT
[ENA]
¡û
>W1810756432
QPFD01000001
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
678702
678627
-
Arg
CCT
[ENA]
¡û
>W11125307
ADVI01000094
Actinomycetota
Nocardioidaceae bacterium Broad-1 [ADVI]
186314
186389
+
Arg
CCT
[ENA]
¡û
>W1511540031
JZDQ01000004
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
68151
68076
-
Arg
CCT
[ENA]
¡û
>W1610050532
BBFY01000666
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1403
1476
+
Arg
CCT
[ENA]
¡û
>W1610068493
BCRJ01000056
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
12845
12772
-
Arg
CCT
[ENA]
¡û
>W1610723152
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
628531
628456
-
Arg
CCT
[ENA]
¡û
>W1610726041
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
701897
701970
+
Arg
CCT
[ENA]
¡û
>W1610727282
LMGG01000007
Actinomycetota
Nocardioides sp. Root151 [LMGG]
300837
300764
-
Arg
CCT
[ENA]
¡û
>W1610727994
LMGV01000007
Actinomycetota
Nocardioides sp. Root614 [LMGV]
281715
281640
-
Arg
CCT
[ENA]
¡û
>W1610728692
LMHJ01000003
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
281832
281757
-
Arg
CCT
[ENA]
¡û
>W1610729452
LMIA01000001
Actinomycetota
Nocardioides sp. Root190 [LMIA]
146691
146766
+
Arg
CCT
[ENA]
¡û
>W1610730161
LMIP01000010
Actinomycetota
Nocardioides sp. Root79 [LMIP]
46785
46860
+
Arg
CCT
[ENA]
¡û
>W1610730369
LMIT01000011
Actinomycetota
Nocardioides sp. Root240 [LMIT]
46764
46839
+
Arg
CCT
[ENA]
¡û
>W1610736436
LMNH01000006
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
12470
12395
-
Arg
CCT
[ENA]
¡û
>W1610737219
LMNY01000002
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1202545
1202620
+
Arg
CCT
[ENA]
¡û
>W1610742986
LMSM01000001
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
219925
219850
-
Arg
CCT
[ENA]
¡û
>W1610743050
LMSN01000015
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
313195
313122
-
Arg
CCT
[ENA]
¡û
>W1610743241
LMSQ01000019
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
545836
545909
+
Arg
CCT
[ENA]
¡û
>W1610743283
LMSR01000016
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
410494
410419
-
Arg
CCT
[ENA]
¡û
>W1610743399
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1315523
1315598
+
Arg
CCT
[ENA]
¡û
>W1710046931
BBFY01000666
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1403
1476
+
Arg
CCT
[ENA]
¡û
>W1710065866
BCRJ01000056
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
12845
12772
-
Arg
CCT
[ENA]
¡û
>W1710520316
FNFN01000002
Actinomycetota
Nocardioides sp. YR527 [FNFN]
45806
45881
+
Arg
CCT
[ENA]
¡û
>W1710534271
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
710348
710423
+
Arg
CCT
[ENA]
¡û
>W1710556270
FOKC01000001
Actinomycetota
Nocardioides alpinus [FOKC]
629503
629578
+
Arg
CCT
[ENA]
¡û
>W1710564155
FOQG01000035
Actinomycetota
Nocardioides psychrotolerans [FOQG]
641
568
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK