This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237588 (114 seq.)
>W1710864546
LMFY01000002
Actinomycetota
Microbacterium sp. Root553 [LMFY]
271778
271853
+
Thr
TGT
[ENA]
¡û
>W1710868862
LMJK01000003
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
584818
584893
+
Thr
TGT
[ENA]
¡û
>W1710870064
LMKF01000025
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
228491
228416
-
Thr
TGT
[ENA]
¡û
>W1710875124
LMOD01000003
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
302624
302551
-
Thr
TGT
[ENA]
¡û
>W1710875808
LMOR01000003
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
433380
433453
+
Thr
TGT
[ENA]
¡û
>W1710875944
LMOU01000002
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
265516
265441
-
Thr
TGT
[ENA]
¡û
>W1710876019
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
271245
271170
-
Thr
TGT
[ENA]
¡û
>W1710876515
LMPH01000002
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
272849
272776
-
Thr
TGT
[ENA]
¡û
>W1710878600
LMRB01000004
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
101387
101314
-
Thr
TGT
[ENA]
¡û
>W1710909123
LNQG01000012
Actinomycetota
Microbacterium enclense [LNQG]
122348
122275
-
Thr
TGT
[ENA]
¡û
>W1711003151
LQGV01000001
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
1206307
1206232
-
Thr
TGT
[ENA]
¡û
>W1711009271
LQQP01000002
Actinomycetota
Microbacterium sp. T32 [LQQP]
206432
206505
+
Thr
TGT
[ENA]
¡û
>W1711022911
LRAD01000024
Actinomycetota
Microbacterium laevaniformans [LRAD]
60858
60933
+
Thr
TGT
[ENA]
¡û
>W1711061114
LRYC01000044
Actinomycetota
Microbacterium hominis [LRYC]
41829
41754
-
Thr
TGT
[ENA]
¡û
>W1711082421
LSTV01000003
Actinomycetota
Microbacterium oleivorans [LSTV]
260120
260195
+
Thr
TGT
[ENA]
¡û
>W1711318602
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
1249348
1249273
-
Thr
TGT
[ENA]
¡û
>W1711385502
MEEH01000018
Actinomycetota
Microbacterium sp. SCN 71-17 [MEEH]
69369
69442
+
Thr
TGT
[ENA]
¡û
>W1711385661
MEEK01000064
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
1271
1346
+
Thr
TGT
[ENA]
¡û
>W1711385679
MEEL01000028
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
88940
89015
+
Thr
TGT
[ENA]
¡û
>W131161940
AQYD01000007
Actinomycetota
Microbacterium sp. 292MF [AQYD]
358014
357939
-
Thr
TGT
[ENA]
¡û
>W131162171
AQYI01000005
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
368133
368208
+
Thr
TGT
[ENA]
¡û
>W131185016
ARTJ01000003
Actinomycetota
Microbacterium sp. 11MF [ARTJ]
931788
931863
+
Thr
TGT
[ENA]
¡û
>W131204585
ATCC01000006
Actinomycetota
Microbacterium sp. oral taxon 186 oral taxon 186 str. F0373 [ATCC]
803629
803704
+
Thr
TGT
[ENA]
¡û
>W131235603
AULS01000012
Actinomycetota
Microbacterium luticocti DSM 19459 [AULS]
3492
3417
-
Thr
TGT
[ENA]
¡û
>W1711501583
MKRU01000026
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
15440
15515
+
Thr
TGT
[ENA]
¡û
>W1711503430
MKTP01000001
Actinomycetota
Microbacterium sp. 71-36 [MKTP]
931238
931165
-
Thr
TGT
[ENA]
¡û
>W1711719899
MTIO01000007
Actinomycetota
Microbacterium oleivorans [MTIO]
59404
59479
+
Thr
TGT
[ENA]
¡û
>W1711724796
MTQM01000009
Actinomycetota
Microbacterium sp. CSI-V [MTQM]
744884
744811
-
Thr
TGT
[ENA]
¡û
>C171065813
CP017674
Actinomycetota
Microbacterium sp. BH-3-3-3 [CP017674]
3042577
3042650
+
Thr
TGT
-
¡û
>C171073925
CP018151
Actinomycetota
Microbacterium sp. 1.5R [CP018151]
2564890
2564815
-
Thr
TGT
-
¡û
>W141041452
AMCB01000287
Actinomycetota
Microbacterium sp. AO20a11 [AMCB]
5441
5368
-
Thr
TGT
[ENA]
¡û
>W141223205
BADA01000559
Actinomycetota
Microbacterium sp. B19 [BADA]
5717
5790
+
Thr
TGT
[ENA]
¡û
>W141223241
BADB01000388
Actinomycetota
Microbacterium sp. B24 [BADB]
3032
3107
+
Thr
TGT
[ENA]
¡û
>W141243142
CAJF01000010
Actinomycetota
Microbacterium yannicii PS01 [CAJF]
26163
26238
+
Thr
TGT
[ENA]
¡û
>W141291979
JAUF01000018
Actinomycetota
Microbacterium sp. MRS-1 [JAUF]
140786
140861
+
Thr
TGT
[ENA]
¡û
>WENV183728509
PJTQ01000097
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
107797
107872
+
Thr
TGT
[ENA]
¢þ
>WENV183736346
PJUC01000960
[PJUC] soil metagenome; Soil enriched on filter paper
1876
1802
-
Thr
TGT
[ENA]
¢þ
>WENV183737283
PJUD01002822
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
601
676
+
Thr
TGT
[ENA]
¢þ
>WENV183738333
PJUD01165158
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
377
304
-
Thr
TGT
[ENA]
¢þ
>WENV183740128
PJUF01000407
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
10283
10358
+
Thr
TGT
[ENA]
¢þ
>W141484332
JFYO01000011
Actinomycetota
Microbacterium oleivorans [JFYO]
137820
137895
+
Thr
TGT
[ENA]
¡û
>C181115677
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
1192903
1192977
+
Thr
TGT
-
¡û
>C181200438
CP031425
Actinomycetota
Microbacterium foliorum NRRL B-24224 [CP031425]
2624862
2624789
-
Thr
TGT
-
¡û
>C191074798
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
910859
910934
+
Thr
TGT
-
¡û
>C191119739
CP034121
Actinomycetota
Microbacterium sp. RG1 [CP034121]
1639194
1639121
-
Thr
TGT
-
¡û
>C191122365
CP034245
Actinomycetota
Microbacterium sp. 10M-3C3 [CP034245]
1171252
1171325
+
Thr
TGT
-
¡û
>C191144040
CP035494
Actinomycetota
Microbacterium protaetiae DFW100M-13 [CP035494]
257546
257471
-
Thr
TGT
-
¡û
>C191185978
CP041040
Actinomycetota
Microbacterium foliorum M2 [CP041040]
2576279
2576204
-
Thr
TGT
-
¡û
>W141565014
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
214889
214964
+
Thr
TGT
[ENA]
¡û
>W141739362
JNNT01000151
Actinomycetota
Microbacterium sp. SUBG005 [JNNT]
23773
23848
+
Thr
TGT
[ENA]
¡û
>W141817477
JQKT01000007
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
365855
365930
+
Thr
TGT
[ENA]
¡û
>W1910181899
BJML01000002
Actinomycetota
Microbacterium testaceum NBRC 12675 [BJML]
218850
218775
-
Thr
TGT
[ENA]
¡û
>W1911140340
NOYP01000049
Actinomycetota
Rhodococcus sp. 06-1477-1B [NOYP]
53347
53273
-
Thr
TGT
[ENA]
¡û
>W1810234104
PPEE01000001
Actinomycetota
Microbacterium testaceum KU313 [PPEE]
507098
507171
+
Thr
TGT
[ENA]
¡û
>W1810475474
QAJB01000043
Actinomycetota
Microbacterium sp. HMWF026 [QAJB]
471
546
+
Thr
TGT
[ENA]
¡û
>W1810538340
QDFT01000010
Actinomycetota
Microbacterium testaceum TPD7010 [QDFT]
73010
72936
-
Thr
TGT
[ENA]
¡û
>W1810570365
QEIJ01000003
Actinomycetota
Microbacterium sp. Gd 4-13 [QEIJ]
339021
338946
-
Thr
TGT
[ENA]
¡û
>W1810787031
QRDK01000002
Actinomycetota
Microbacterium sp. AG157 [QRDK]
277340
277265
-
Thr
TGT
[ENA]
¡û
>W1810861341
QTTU01000003
Actinomycetota
Microbacterium chocolatum 1320 [QTTU]
37359
37286
-
Thr
TGT
[ENA]
¡û
>W1810861477
QTTX01000001
Actinomycetota
Microbacterium sp. 1294 [QTTX]
1447186
1447260
+
Thr
TGT
[ENA]
¡û
>C151093261
CP012299
Actinomycetota
Microbacterium sp. CGR1 [CP012299]
1605849
1605774
-
Thr
TGT
-
¡û
>C11115185
AP012052
Actinomycetota
Microbacterium testaceum StLB037 [AP012052]
2974986
2975061
+
Thr
TGT
[Ensembl]
¡û
>W1511398186
JTDK01000006
Actinomycetota
Microbacterium mangrovi MUSC 115 [JTDK]
607686
607611
-
Thr
TGT
[ENA]
¡û
>W1511432647
JUGQ01000004
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
244541
244616
+
Thr
TGT
[ENA]
¡û
>W1511489497
JWSZ01000001
Actinomycetota
Microbacterium hominis TPW29 [JWSZ]
260064
260139
+
Thr
TGT
[ENA]
¡û
>W1511509275
JXQX01000014
Actinomycetota
Microbacterium sp. MEJ108Y [JXQX]
38927
39002
+
Thr
TGT
[ENA]
¡û
>W1511510219
JXRU01000027
Actinomycetota
Microbacterium sp. SA39 [JXRU]
53202
53127
-
Thr
TGT
[ENA]
¡û
>W1511528710
JYIU01000042
Actinomycetota
Microbacterium foliorum DSM 12966 [JYIU]
125779
125854
+
Thr
TGT
[ENA]
¡û
>W1511528795
JYIW01000025
Actinomycetota
Microbacterium oxydans BEL4b [JYIW]
100477
100552
+
Thr
TGT
[ENA]
¡û
>W1511528930
JYIZ01000042
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
34937
34862
-
Thr
TGT
[ENA]
¡û
>C161043596
CP012697
Actinomycetota
Microbacterium sp. No. 7 [CP012697]
1493005
1493080
+
Thr
TGT
[Ensembl]
¡û
>W1610050686
BBGC01000900
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
567
492
-
Thr
TGT
[ENA]
¡û
>W1610068294
BCRF01000008
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
26878
26953
+
Thr
TGT
[ENA]
¡û
>W1610068349
BCRG01000007
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
69406
69481
+
Thr
TGT
[ENA]
¡û
>W1610074008
BCWI01000012
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
48576
48651
+
Thr
TGT
[ENA]
¡û
>W121061270
AJGR01000124
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
90945
90870
-
Thr
TGT
[ENA]
¡û
>W1610590780
LDRR01000193
Actinomycetota
Microbacterium testaceum [LDRR]
700
775
+
Thr
TGT
[ENA]
¡û
>W1610590823
LDRS01000158
Actinomycetota
Microbacterium testaceum [LDRS]
629
704
+
Thr
TGT
[ENA]
¡û
>W1610590865
LDRT01000164
Actinomycetota
Microbacterium testaceum [LDRT]
29669
29594
-
Thr
TGT
[ENA]
¡û
>W1610590899
LDRU01000078
Actinomycetota
Microbacterium testaceum [LDRU]
689
764
+
Thr
TGT
[ENA]
¡û
>W1610590948
LDRV01000093
Actinomycetota
Microbacterium testaceum [LDRV]
48096
48021
-
Thr
TGT
[ENA]
¡û
>W1610726892
LMFY01000002
Actinomycetota
Microbacterium sp. Root553 [LMFY]
271778
271853
+
Thr
TGT
[ENA]
¡û
>W1610731208
LMJK01000003
Actinomycetota
Microbacterium sp. Root280D1 [LMJK]
584818
584893
+
Thr
TGT
[ENA]
¡û
>W1610732410
LMKF01000025
Actinomycetota
Microbacterium sp. Leaf203 [LMKF]
228491
228416
-
Thr
TGT
[ENA]
¡û
>W1610737470
LMOD01000003
Actinomycetota
Microbacterium sp. Leaf320 [LMOD]
302624
302551
-
Thr
TGT
[ENA]
¡û
>W1610738154
LMOR01000003
Actinomycetota
Microbacterium sp. Leaf151 [LMOR]
433380
433453
+
Thr
TGT
[ENA]
¡û
>W1610738290
LMOU01000002
Actinomycetota
Microbacterium sp. Leaf159 [LMOU]
265516
265441
-
Thr
TGT
[ENA]
¡û
>W1610738365
LMOW01000001
Actinomycetota
Microbacterium sp. Leaf161 [LMOW]
271245
271170
-
Thr
TGT
[ENA]
¡û
>W1610738861
LMPH01000002
Actinomycetota
Microbacterium sp. Leaf179 [LMPH]
272849
272776
-
Thr
TGT
[ENA]
¡û
>W1610740946
LMRB01000004
Actinomycetota
Microbacterium sp. Leaf436 [LMRB]
101387
101314
-
Thr
TGT
[ENA]
¡û
>W1610767482
LNQG01000012
Actinomycetota
Microbacterium enclense [LNQG]
122348
122275
-
Thr
TGT
[ENA]
¡û
>W1610853716
LQGV01000001
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
1206307
1206232
-
Thr
TGT
[ENA]
¡û
>W1610857791
LQQP01000002
Actinomycetota
Microbacterium sp. T32 [LQQP]
206432
206505
+
Thr
TGT
[ENA]
¡û
>W1610871156
LRAD01000024
Actinomycetota
Microbacterium laevaniformans [LRAD]
60858
60933
+
Thr
TGT
[ENA]
¡û
>W1610902091
LRYC01000044
Actinomycetota
Microbacterium hominis [LRYC]
41829
41754
-
Thr
TGT
[ENA]
¡û
>W1610921206
LSTV01000003
Actinomycetota
Microbacterium oleivorans [LSTV]
260120
260195
+
Thr
TGT
[ENA]
¡û
>W1611061945
MAYO01000003
Actinomycetota
Microbacterium oleivorans [MAYO]
1249348
1249273
-
Thr
TGT
[ENA]
¡û
>W1710047085
BBGC01000900
Actinomycetota
Agromyces mediolanus JCM 9631 [BBGC]
567
492
-
Thr
TGT
[ENA]
¡û
>W1710065667
BCRF01000008
Actinomycetota
Microbacterium hydrocarbonoxydans NBRC 103074 [BCRF]
26878
26953
+
Thr
TGT
[ENA]
¡û
>W1710065722
BCRG01000007
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
69406
69481
+
Thr
TGT
[ENA]
¡û
>W1710071126
BCWI01000012
Actinomycetota
Microbacterium hominis NBRC 15708 [BCWI]
48576
48651
+
Thr
TGT
[ENA]
¡û
>W1710510843
FMYG01000006
Actinomycetota
Microbacterium enclense [FMYG]
254369
254296
-
Thr
TGT
[ENA]
¡û
>W1710516594
FNCR01000003
Actinomycetota
Microbacterium sp. 77mftsu3.1 [FNCR]
92697
92622
-
Thr
TGT
[ENA]
¡û
>W1710525107
FNJG01000003
Actinomycetota
Microbacterium sp. ru370.1 [FNJG]
452466
452541
+
Thr
TGT
[ENA]
¡û
>W1710525430
FNJN01000007
Actinomycetota
Microbacterium testaceum StLB037 [FNJN]
67055
67130
+
Thr
TGT
[ENA]
¡û
>W1710535569
FNSQ01000005
Actinomycetota
Microbacterium hydrocarbonoxydans [FNSQ]
1155257
1155332
+
Thr
TGT
[ENA]
¡û
>W1710565092
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
365872
365947
+
Thr
TGT
[ENA]
¡û
>W1710598008
FTNQ01000003
Actinomycetota
Microbacterium sp. RURRCA19A [FTNQ]
243041
242966
-
Thr
TGT
[ENA]
¡û
>W1710600081
FTPQ01000003
Actinomycetota
Microbacterium sp. RU1D [FTPQ]
202484
202409
-
Thr
TGT
[ENA]
¡û
>W1710710060
LDRR01000193
Actinomycetota
Microbacterium testaceum [LDRR]
700
775
+
Thr
TGT
[ENA]
¡û
>W1710710103
LDRS01000158
Actinomycetota
Microbacterium testaceum [LDRS]
629
704
+
Thr
TGT
[ENA]
¡û
>W1710710145
LDRT01000164
Actinomycetota
Microbacterium testaceum [LDRT]
29669
29594
-
Thr
TGT
[ENA]
¡û
>W1710710179
LDRU01000078
Actinomycetota
Microbacterium testaceum [LDRU]
689
764
+
Thr
TGT
[ENA]
¡û
>W1710710228
LDRV01000093
Actinomycetota
Microbacterium testaceum [LDRV]
48096
48021
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK