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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237597 (59 seq.)
>W1710867766
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
742023
742098
+
Thr
CGT
[ENA]
¡û
>W1710869664
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
19260
19185
-
Thr
CGT
[ENA]
¡û
>W1710875042
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
500702
500777
+
Thr
CGT
[ENA]
¡û
>W1710876155
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
433499
433574
+
Thr
CGT
[ENA]
¡û
>W1710876180
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
19222
19147
-
Thr
CGT
[ENA]
¡û
>W1710921169
LNZG01000016
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
28660
28735
+
Thr
CGT
[ENA]
¡û
>W131162245
AQYK01000001
Actinomycetota
Leifsonia sp. 109 [AQYK]
1058185
1058260
+
Thr
CGT
[ENA]
¡û
>W1711173298
LWCT01000007
Actinomycetota
Plantibacter sp. H53 [LWCT]
21007
21082
+
Thr
CGT
[ENA]
¡û
>W131184641
ARTB01000002
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
192064
191989
-
Thr
CGT
[ENA]
¡û
>W1711385585
MEEJ01000004
Actinomycetota
Microbacterium sp. SCN 70-200 [MEEJ]
94439
94514
+
Thr
CGT
[ENA]
¡û
>W1711385642
MEEK01000026
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
14406
14481
+
Thr
CGT
[ENA]
¡û
>W1711461514
MJGW01000001
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
502410
502485
+
Thr
CGT
[ENA]
¡û
>W1711503496
MKTQ01000029
Actinomycetota
Microbacterium sp. 70-16 [MKTQ]
44018
43943
-
Thr
CGT
[ENA]
¡û
>W1711505302
MKVJ01000019
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
89651
89576
-
Thr
CGT
[ENA]
¡û
>W1711961750
NCSR01000008
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
135995
135920
-
Thr
CGT
[ENA]
¡û
>C171083221
CP018762
Actinomycetota
Microbacterium aurum KACC 15219 [CP018762]
1058561
1058636
+
Thr
CGT
-
¡û
>C012810
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
414101
414176
+
Thr
CGT
[Ensembl]
¡û
>WENV180016190
FSUF01000129
[FSUF] metagenome; soil
2901
2974
+
Thr
CGT
[ENA]
¢þ
>WENV180017680
FSXL01000695
[FSXL] metagenome; soil
17019
17093
+
Thr
CGT
[ENA]
¢þ
>WENV180018564
FSZS01000037
[FSZS] metagenome; soil
2470
2395
-
Thr
CGT
[ENA]
¢þ
>WENV180018936
FTBD01000009
[FTBD] metagenome; soil
2361
2436
+
Thr
CGT
[ENA]
¢þ
>WENV180025591
FTIP01096810
[FTIP] metagenome; soil
137
62
-
Thr
CGT
[ENA]
¢þ
>WENV180025933
FTIR01000330
[FTIR] metagenome; soil
4208
4283
+
Thr
CGT
[ENA]
¢þ
>WENV180026282
FTIT01000848
[FTIT] metagenome; soil
276
202
-
Thr
CGT
[ENA]
¢þ
>WENV180032914
FTKD01003647
[FTKD] metagenome; soil
265
340
+
Thr
CGT
[ENA]
¢þ
>WENV180256783
OBEQ010852715
[OBEQ] groundwater metagenome; groundwater
345
420
+
Thr
CGT
[ENA]
¢þ
>W141146502
AWVQ01000198
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
17291
17216
-
Thr
CGT
[ENA]
¡û
>W141188421
AYMR01000030
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
14100
14173
+
Thr
CGT
[ENA]
¡û
>WENV183697887
OUNK010255357
[OUNK] metagenome; soil
1707
1781
+
Thr
CGT
[ENA]
¢þ
>WENV183697937
OUNK010430222
[OUNK] metagenome; soil
209
284
+
Thr
CGT
[ENA]
¢þ
>C191101007
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
3871703
3871628
-
Thr
CGT
-
¡û
>C191182585
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
830215
830140
-
Thr
CGT
-
¡û
>W1910182598
BJNA01000015
Actinomycetota
Microbacterium lacticum NBRC 14135 [BJNA]
8555
8480
-
Thr
CGT
[ENA]
¡û
>C141007905
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
2200321
2200246
-
Thr
CGT
[Ensembl]
¡û
>W1911566478
PCOW01000001
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
243675
243748
+
Thr
CGT
[ENA]
¡û
>W1911671591
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
804335
804260
-
Thr
CGT
[ENA]
¡û
>W1810091037
PGGU01000004
Actinomycetota
Microbacterium aurantiacum Sa12 [PGGU]
251292
251366
+
Thr
CGT
[ENA]
¡û
>W1810684449
QKXI01000004
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
36982
37057
+
Thr
CGT
[ENA]
¡û
>W1511528673
JYIT01000076
Actinomycetota
Microbacterium azadirachtae DSM 23848 [JYIT]
81460
81385
-
Thr
CGT
[ENA]
¡û
>W1511528857
JYIX01000039
Actinomycetota
Microbacterium azadirachtae ARN176 [JYIX]
141982
142057
+
Thr
CGT
[ENA]
¡û
>W1511691452
LFYU01002499
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
244
169
-
Thr
CGT
[ENA]
¡û
>C161076860
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
3062787
3062862
+
Thr
CGT
[Ensembl]
¡û
>W1610050274
BBFR01000312
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
1426
1501
+
Thr
CGT
[ENA]
¡û
>W1610730112
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
742023
742098
+
Thr
CGT
[ENA]
¡û
>W1610732010
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
19260
19185
-
Thr
CGT
[ENA]
¡û
>W1610737388
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
500702
500777
+
Thr
CGT
[ENA]
¡û
>W1610738501
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
433499
433574
+
Thr
CGT
[ENA]
¡û
>W1610738526
LMPA01000001
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
19222
19147
-
Thr
CGT
[ENA]
¡û
>W1610981903
LWCT01000007
Actinomycetota
Plantibacter sp. H53 [LWCT]
21007
21082
+
Thr
CGT
[ENA]
¡û
>W1710046673
BBFR01000312
Actinomycetota
Microbacterium xylanilyticum JCM 13591 [BBFR]
1426
1501
+
Thr
CGT
[ENA]
¡û
>W1710521765
FNGQ01000004
Actinomycetota
Microbacterium azadirachtae cl140 [FNGQ]
257292
257217
-
Thr
CGT
[ENA]
¡û
>W1710538414
FNUN01000004
Actinomycetota
Microbacterium azadirachtae cl12a [FNUN]
257273
257198
-
Thr
CGT
[ENA]
¡û
>W1710538578
FNUQ01000004
Actinomycetota
Microbacterium azadirachtae cl152 [FNUQ]
256571
256496
-
Thr
CGT
[ENA]
¡û
>W1710540806
FNXD01000013
Actinomycetota
Leifsonia sp. CL154 [FNXD]
83664
83739
+
Thr
CGT
[ENA]
¡û
>W1710568282
FOTM01000013
Actinomycetota
Leifsonia sp. CL147 [FOTM]
30040
29965
-
Thr
CGT
[ENA]
¡û
>W1710574952
FOYR01000001
Actinomycetota
Microbacterium azadirachtae cl127 [FOYR]
1581509
1581434
-
Thr
CGT
[ENA]
¡û
>W1710603981
FUZO01000002
Actinomycetota
Plantibacter cousiniae [FUZO]
739901
739976
+
Thr
CGT
[ENA]
¡û
>W1710608089
FXAP01000004
Actinomycetota
Plantibacter flavus [FXAP]
184153
184078
-
Thr
CGT
[ENA]
¡û
>W1710609365
FXWJ01000005
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
513017
513092
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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