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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237599 (75 seq.)
>W1710861312
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
99935
99860
-
Glu
CTC
[ENA]
¡û
>W1710861313
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
99747
99672
-
Glu
CTC
[ENA]
¡û
>W1710862327
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1205516
1205441
-
Glu
CTC
[ENA]
¡û
>W1710864358
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
817845
817772
-
Glu
CTC
[ENA]
¡û
>W1710865453
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1205481
1205406
-
Glu
CTC
[ENA]
¡û
>W1710867917
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
995206
995133
-
Glu
CTC
[ENA]
¡û
>W1710869689
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
743167
743092
-
Glu
CTC
[ENA]
¡û
>W1710870313
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
392856
392783
-
Glu
CTC
[ENA]
¡û
>W1710870591
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1817696
1817769
+
Glu
CTC
[ENA]
¡û
>W1710870592
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1817847
1817920
+
Glu
CTC
[ENA]
¡û
>W1710872348
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
305638
305565
-
Glu
CTC
[ENA]
¡û
>W1710873267
LMMR01000001
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
325014
324939
-
Glu
CTC
[ENA]
¡û
>W1710873985
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
120458
120531
+
Glu
CTC
[ENA]
¡û
>W1710875024
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
792393
792318
-
Glu
CTC
[ENA]
¡û
>W1710875457
LMOK01000001
Actinomycetota
Leifsonia sp. Leaf325 [LMOK]
2529
2604
+
Glu
CTC
[ENA]
¡û
>W1710875743
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
854230
854303
+
Glu
CTC
[ENA]
¡û
>W1710876205
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
743214
743139
-
Glu
CTC
[ENA]
¡û
>W131179540
ARMM01000002
Actinomycetota
Gulosibacter faecalis ATCC 13722 [ARMM]
151191
151116
-
Glu
CTC
[ENA]
¡û
>W1711173312
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
166094
166169
+
Glu
CTC
[ENA]
¡û
>W131217894
ATXF01000004
Actinomycetota
Agromyces italicus DSM 16388 [ATXF]
26833
26908
+
Glu
CTC
[ENA]
¡û
>W131217945
ATXG01000002
Actinomycetota
Agromyces subbeticus DSM 16689 [ATXG]
76359
76432
+
Glu
CTC
[ENA]
¡û
>W1711461545
MJGW01000017
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
222814
222739
-
Glu
CTC
[ENA]
¡û
>WENV180691518
OCZS010144434
[OCZS] soil metagenome; soil
157
84
-
Glu
CTC
[ENA]
¢þ
>C181143947
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
1934885
1934812
-
Glu
CTC
-
¡û
>C181169646
CP028913
Actinomycetota
Agromyces badenianii MF30-A [CP028913]
1923344
1923271
-
Glu
CTC
-
¡û
>C191100991
CP033107
Actinomycetota
Plantibacter sp. PA-3-X8 [CP033107]
2469083
2469156
+
Glu
CTC
-
¡û
>C191182554
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
3589633
3589706
+
Glu
CTC
-
¡û
>C191183326
CP040872
Actinomycetota
Agromyces laixinhei HY052 [CP040872]
1729457
1729530
+
Glu
CTC
-
¡û
>W1910374246
FUIC01000021
Actinomycetota
Gulosibacter sp. 10 [FUIC]
34854
34779
-
Glu
CTC
[ENA]
¡û
>W1910784603
MPZN01000021
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
29223
29150
-
Glu
CTC
[ENA]
¡û
>W1910784604
MPZN01000021
Actinomycetota
Microterricola pindariensis PON 10 [MPZN]
28512
28439
-
Glu
CTC
[ENA]
¡û
>W1911671575
QGAE01000001
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
718612
718539
-
Glu
CTC
[ENA]
¡û
>W1810282004
PSXW01000015
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
102308
102381
+
Glu
CTC
[ENA]
¡û
>W1810392929
PYAU01000001
Actinomycetota
Labedella gwakjiensis DSM 21548 [PYAU]
3649536
3649463
-
Glu
CTC
[ENA]
¡û
>W1810568989
QEFA01000002
Actinomycetota
Agromyces badenianii 845 [QEFA]
135350
135423
+
Glu
CTC
[ENA]
¡û
>W1810569032
QEFB01000001
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
616094
616021
-
Glu
CTC
[ENA]
¡û
>W1810657170
QJHB01000008
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
76603
76530
-
Glu
CTC
[ENA]
¡û
>W1810860829
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1993234
1993307
+
Glu
CTC
[ENA]
¡û
>W1810860830
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1993385
1993458
+
Glu
CTC
[ENA]
¡û
>W1810886016
QUNT01000001
Actinomycetota
Agromyces sp. OV568 [QUNT]
477023
477096
+
Glu
CTC
[ENA]
¡û
>W1511432350
JUGL01000012
Actinomycetota
Herbiconiux sp. YR403 [JUGL]
292527
292602
+
Glu
CTC
[ENA]
¡û
>W1511524518
JYFC01000005
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
200340
200265
-
Glu
CTC
[ENA]
¡û
>C161063197
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
1886282
1886355
+
Glu
CTC
[Ensembl]
¡û
>C161063198
CP013979
Actinomycetota
Agromyces aureus AR33 [CP013979]
1886432
1886505
+
Glu
CTC
[Ensembl]
¡û
>C161067221
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
884573
884646
+
Glu
CTC
[Ensembl]
¡û
>C161067222
CP014145
Actinomycetota
Microterricola viridarii ERGS5:02 [CP014145]
885033
885108
+
Glu
CTC
[Ensembl]
¡û
>W1610069573
BCSP01000002
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
55634
55709
+
Glu
CTC
[ENA]
¡û
>W1610723658
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
99935
99860
-
Glu
CTC
[ENA]
¡û
>W1610723659
LMDN01000001
Actinomycetota
Leifsonia sp. Root4 [LMDN]
99747
99672
-
Glu
CTC
[ENA]
¡û
>W1610724673
LMEH01000001
Actinomycetota
Leifsonia sp. Root1293 [LMEH]
1205516
1205441
-
Glu
CTC
[ENA]
¡û
>W1610726704
LMFU01000002
Actinomycetota
Agromyces sp. Root1464 [LMFU]
817845
817772
-
Glu
CTC
[ENA]
¡û
>W1610727799
LMGR01000001
Actinomycetota
Leifsonia sp. Root60 [LMGR]
1205481
1205406
-
Glu
CTC
[ENA]
¡û
>W1610730263
LMIR01000001
Actinomycetota
Agromyces sp. Root81 [LMIR]
995206
995133
-
Glu
CTC
[ENA]
¡û
>W1610732035
LMJX01000002
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
743167
743092
-
Glu
CTC
[ENA]
¡û
>W1610732659
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
392856
392783
-
Glu
CTC
[ENA]
¡û
>W1610732937
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1817696
1817769
+
Glu
CTC
[ENA]
¡û
>W1610732938
LMKQ01000001
Actinomycetota
Agromyces sp. Leaf222 [LMKQ]
1817847
1817920
+
Glu
CTC
[ENA]
¡û
>W1610734694
LMLX01000003
Actinomycetota
Agreia sp. Leaf244 [LMLX]
305638
305565
-
Glu
CTC
[ENA]
¡û
>W1610735613
LMMR01000001
Actinomycetota
Leifsonia sp. Leaf264 [LMMR]
325014
324939
-
Glu
CTC
[ENA]
¡û
>W1610736331
LMNF01000003
Actinomycetota
Agreia sp. Leaf283 [LMNF]
120458
120531
+
Glu
CTC
[ENA]
¡û
>W1610737370
LMOB01000001
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
792393
792318
-
Glu
CTC
[ENA]
¡û
>W1610738089
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
854230
854303
+
Glu
CTC
[ENA]
¡û
>W1610738551
LMPA01000002
Actinomycetota
Plantibacter sp. Leaf171 [LMPA]
743214
743139
-
Glu
CTC
[ENA]
¡û
>W1610981917
LWCT01000035
Actinomycetota
Plantibacter sp. H53 [LWCT]
166094
166169
+
Glu
CTC
[ENA]
¡û
>W1710066946
BCSP01000002
Actinomycetota
Gulosibacter bifidus NBRC 103089 [BCSP]
55634
55709
+
Glu
CTC
[ENA]
¡û
>W1710570910
FOVM01000002
Actinomycetota
Mycetocola miduiensis [FOVM]
201697
201772
+
Glu
CTC
[ENA]
¡û
>W1710575389
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2094756
2094829
+
Glu
CTC
[ENA]
¡û
>W1710575390
FOZD01000001
Actinomycetota
Agromyces sp. CF514 [FOZD]
2094907
2094980
+
Glu
CTC
[ENA]
¡û
>W1710594664
FSRJ01000001
Actinomycetota
Agromyces cerinus subsp. cerinus [FSRJ]
445653
445726
+
Glu
CTC
[ENA]
¡û
>W1710602505
FUYG01000004
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
361056
361131
+
Glu
CTC
[ENA]
¡û
>W1710603949
FUZO01000001
Actinomycetota
Plantibacter cousiniae [FUZO]
1925995
1926070
+
Glu
CTC
[ENA]
¡û
>W1710608058
FXAP01000001
Actinomycetota
Plantibacter flavus [FXAP]
690930
691005
+
Glu
CTC
[ENA]
¡û
>W1710608519
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
257446
257373
-
Glu
CTC
[ENA]
¡û
>W1710609288
FXWI01000001
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
646092
646165
+
Glu
CTC
[ENA]
¡û
>W1710609339
FXWJ01000002
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
694410
694335
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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