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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237619 (59 seq.)
>W1710862720
LMEO01000052
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
312086
312011
-
Phe
GAA
[ENA]
¡û
>W1710879861
LMRY01000023
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
316803
316728
-
Phe
GAA
[ENA]
¡û
>W1710880111
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
273714
273640
-
Phe
GAA
[ENA]
¡û
>W1710880148
LMSD01000022
Bacillota
Paenibacillus sp. Soil750 [LMSD]
517
592
+
Phe
GAA
[ENA]
¡û
>W1710880167
LMSD01000029
Bacillota
Paenibacillus sp. Soil750 [LMSD]
22661
22586
-
Phe
GAA
[ENA]
¡û
>W1710880445
LMSJ01000002
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
3807
3882
+
Phe
GAA
[ENA]
¡û
>W1710880469
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153331
153257
-
Phe
GAA
[ENA]
¡û
>W1710880822
LMSP01000031
Bacillota
Paenibacillus sp. Soil787 [LMSP]
32638
32563
-
Phe
GAA
[ENA]
¡û
>W1711166801
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1983077
1983002
-
Phe
GAA
[ENA]
¡û
>W1711252518
LYPB01000052
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
24100
24025
-
Phe
GAA
[ENA]
¡û
>W1711252528
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
670
744
+
Phe
GAA
[ENA]
¡û
>W1711252614
LYPC01000010
Bacillota
Paenibacillus pectinilyticus [LYPC]
284737
284662
-
Phe
GAA
[ENA]
¡û
>W1711252630
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
654
728
+
Phe
GAA
[ENA]
¡û
>W1711252652
LYPC01000017
Bacillota
Paenibacillus pectinilyticus [LYPC]
714
789
+
Phe
GAA
[ENA]
¡û
>W1711338669
MBTG01000044
Bacillota
Paenibacillus ferrarius [MBTG]
347
422
+
Phe
GAA
[ENA]
¡û
>W1711603295
MOLV01000045
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
840
765
-
Phe
GAA
[ENA]
¡û
>W1711603305
MOLV01000046
Bacillota
Exiguobacterium sp. KRL4 [MOLV]
1055
980
-
Phe
GAA
[ENA]
¡û
>w003661
AADW02000015
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
1733
1810
+
Phe
GAA
[ENA]
¡û
>w003635
AADW02000003
Bacillota
Exiguobacterium sibiricum 255-15 [AADW]
279808
279736
-
Phe
GAA
[ENA]
¡û
>C08004772
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
34766
34841
+
Phe
GAA
[Ensembl]
¡û
>C08004807
CP001022
Bacillota
Exiguobacterium sibiricum 255-15 [CP001022]
704431
704506
+
Phe
GAA
[Ensembl]
¡û
>WENV170707989
LNAP01043150
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1650
1578
-
Phe
GAA
[ENA]
¢þ
>W141563068
JHZS01000002
Bacillota
Exiguobacterium sibiricum 7·î3Æü [JHZS]
2090439
2090364
-
Phe
GAA
[ENA]
¡û
>W141563155
JHZU01000002
Bacillota
Exiguobacterium undae 190-11 [JHZU]
908
833
-
Phe
GAA
[ENA]
¡û
>W141563201
JHZU01000006
Bacillota
Exiguobacterium undae 190-11 [JHZU]
999057
998982
-
Phe
GAA
[ENA]
¡û
>W141563216
JHZV01000002
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
919
844
-
Phe
GAA
[ENA]
¡û
>W141563248
JHZV01000005
Bacillota
Exiguobacterium undae DSM 14481 [JHZV]
1001489
1001414
-
Phe
GAA
[ENA]
¡û
>W141564699
JIAZ01000010
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
338765
338691
-
Phe
GAA
[ENA]
¡û
>W141564741
JIAZ01000037
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
1030
1105
+
Phe
GAA
[ENA]
¡û
>W141564750
JIAZ01000039
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
459
534
+
Phe
GAA
[ENA]
¡û
>W141701492
JMKS01000003
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
1439473
1439548
+
Phe
GAA
[ENA]
¡û
>W141701543
JMKS01000005
Bacillota
Exiguobacterium antarcticum DSM 14480 [JMKS]
239249
239324
+
Phe
GAA
[ENA]
¡û
>W141730981
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
1600400
1600475
+
Phe
GAA
[ENA]
¡û
>W141731016
JNIS01000001
Bacillota
Exiguobacterium oxidotolerans JCM 12280 [JNIS]
2287238
2287313
+
Phe
GAA
[ENA]
¡û
>W1910665287
MCHY01000005
Bacillota
Ammoniphilus oxalaticus RAOx-1 [MCHY]
1629
1704
+
Phe
GAA
[ENA]
¡û
>W1911199966
NREJ01000016
Actinomycetota
Mycobacteroides abscessus subsp. massiliense A174 [NREJ]
185
260
+
Phe
GAA
[ENA]
¡û
>W1911310195
NUAM01000004
Bacillota
Bacillus toyonensis AFS027674 [NUAM]
26
101
+
Phe
GAA
[ENA]
¡û
>W1911364178
NVED01000003
Bacillota
Bacillus thuringiensis AFS059559 [NVED]
29773
29846
+
Phe
GAA
[ENA]
¡û
>W1911770655
QXJB01000001
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
467
542
+
Phe
GAA
[ENA]
¡û
>W1911770700
QXJB01000021
Bacillota
Exiguobacterium sp. RIT452 [QXJB]
819
744
-
Phe
GAA
[ENA]
¡û
>W1810701710
QMFA01000027
Bacillota
Paenibacillus sp. YN15 [QMFA]
521
596
+
Phe
GAA
[ENA]
¡û
>W1810760521
QPKF01000001
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
1893155
1893080
-
Phe
GAA
[ENA]
¡û
>W1810760563
QPKF01000017
Bacillota
Exiguobacterium sp. RIT594 [QPKF]
230
305
+
Phe
GAA
[ENA]
¡û
>C131001789
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
34674
34749
+
Phe
GAA
[Ensembl]
¡û
>C131001820
CP003063
Bacillota
Exiguobacterium antarcticum B7 Eab7 [CP003063]
662778
662853
+
Phe
GAA
[Ensembl]
¡û
>W1610725066
LMEO01000052
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
312086
312011
-
Phe
GAA
[ENA]
¡û
>W1610742207
LMRY01000023
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
316803
316728
-
Phe
GAA
[ENA]
¡û
>W1610742457
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
273714
273640
-
Phe
GAA
[ENA]
¡û
>W1610742494
LMSD01000022
Bacillota
Paenibacillus sp. Soil750 [LMSD]
517
592
+
Phe
GAA
[ENA]
¡û
>W1610742513
LMSD01000029
Bacillota
Paenibacillus sp. Soil750 [LMSD]
22661
22586
-
Phe
GAA
[ENA]
¡û
>W1610742791
LMSJ01000002
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
3807
3882
+
Phe
GAA
[ENA]
¡û
>W1610742815
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153331
153257
-
Phe
GAA
[ENA]
¡û
>W1610743168
LMSP01000031
Bacillota
Paenibacillus sp. Soil787 [LMSP]
32638
32563
-
Phe
GAA
[ENA]
¡û
>W1610977341
LVVL01000001
Bacillota
Exiguobacterium undae [LVVL]
1983077
1983002
-
Phe
GAA
[ENA]
¡û
>W1611017306
LYPB01000052
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
24100
24025
-
Phe
GAA
[ENA]
¡û
>W1611017316
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
670
744
+
Phe
GAA
[ENA]
¡û
>W1611017402
LYPC01000010
Bacillota
Paenibacillus pectinilyticus [LYPC]
284737
284662
-
Phe
GAA
[ENA]
¡û
>W1611017418
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
654
728
+
Phe
GAA
[ENA]
¡û
>W1611017440
LYPC01000017
Bacillota
Paenibacillus pectinilyticus [LYPC]
714
789
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK