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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237682 (45 seq.)
>W1710906994
LNOL01000024
Betaproteobacteria
Alcaligenes faecalis [LNOL]
9516
9441
-
Thr
CGT
[ENA]
¡û
>W1710995916
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
1021186
1021261
+
Thr
CGT
[ENA]
¡û
>W1711710522
MSZN01000031
Betaproteobacteria
Alcaligenes faecalis [MSZN]
27941
28016
+
Thr
CGT
[ENA]
¡û
>W1711710557
MSZO01000007
Betaproteobacteria
Alcaligenes faecalis [MSZO]
9887
9812
-
Thr
CGT
[ENA]
¡û
>W1711710619
MSZP01000007
Betaproteobacteria
Alcaligenes faecalis [MSZP]
232093
232168
+
Thr
CGT
[ENA]
¡û
>W1711710659
MSZQ01000007
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
11071
10996
-
Thr
CGT
[ENA]
¡û
>W1711710709
MSZR01000009
Betaproteobacteria
Alcaligenes faecalis [MSZR]
166087
166162
+
Thr
CGT
[ENA]
¡û
>W1711711869
MTBI01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
1825063
1825138
+
Thr
CGT
[ENA]
¡û
>C171115532
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
1278526
1278451
-
Thr
CGT
-
¡û
>W131051753
AMXV01000010
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
13377
13452
+
Thr
CGT
[ENA]
¡û
>W131223074
AUBT01000013
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
141672
141747
+
Thr
CGT
[ENA]
¡û
>W141104404
AVOG02000001
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
1262940
1263015
+
Thr
CGT
[ENA]
¡û
>W141237740
BBJQ01000010
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
136625
136700
+
Thr
CGT
[ENA]
¡û
>WENV183727842
PJTP01001137
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
2679
2604
-
Thr
CGT
[ENA]
¢þ
>WENV183739605
PJUE01039239
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
244
319
+
Thr
CGT
[ENA]
¢þ
>WENV183741085
PJUF01038626
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
218
143
-
Thr
CGT
[ENA]
¢þ
>WENV183741209
PJUF01056765
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
137
212
+
Thr
CGT
[ENA]
¢þ
>WENV170645976
JQGF01002816
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2906
2831
-
Thr
CGT
[ENA]
¢þ
>WENV170655020
JTFN01002163
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
4229
4304
+
Thr
CGT
[ENA]
¢þ
>WENV170655021
JTFN01002239
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
6
81
+
Thr
CGT
[ENA]
¢þ
>WENV170655272
JTFN01016597
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
91
16
-
Thr
CGT
[ENA]
¢þ
>WENV170655529
JTFN01041949
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
6
81
+
Thr
CGT
[ENA]
¢þ
>WENV170656172
JTFO01002756
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
91
16
-
Thr
CGT
[ENA]
¢þ
>WENV170656304
JTFO01009360
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
6
81
+
Thr
CGT
[ENA]
¢þ
>WENV170656845
JTFO01051714
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
737
812
+
Thr
CGT
[ENA]
¢þ
>WENV170657327
JTFO01126639
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
6
81
+
Thr
CGT
[ENA]
¢þ
>WENV170657974
JTFP01038805
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
983
1058
+
Thr
CGT
[ENA]
¢þ
>C181053251
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
1235736
1235661
-
Thr
CGT
-
¡û
>C181088609
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
997780
997705
-
Thr
CGT
-
¡û
>C191085288
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
1578022
1577947
-
Thr
CGT
-
¡û
>C191091160
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
3730565
3730490
-
Thr
CGT
-
¡û
>C191113965
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
2272450
2272375
-
Thr
CGT
-
¡û
>C191149649
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
3048063
3047988
-
Thr
CGT
-
¡û
>W1810583913
QEXO01000004
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
9979
9904
-
Thr
CGT
[ENA]
¡û
>W1511321016
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
9300
9225
-
Thr
CGT
[ENA]
¡û
>W1511537490
JZBR01000009
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
829105
829180
+
Thr
CGT
[ENA]
¡û
>C161051366
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
3382960
3382885
-
Thr
CGT
[Ensembl]
¡û
>W121091228
AKMR01000014
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
121868
121943
+
Thr
CGT
[ENA]
¡û
>W1610093580
CYTB01000009
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
21273
21198
-
Thr
CGT
[ENA]
¡û
>W1610766008
LNOL01000024
Betaproteobacteria
Alcaligenes faecalis [LNOL]
9516
9441
-
Thr
CGT
[ENA]
¡û
>W1610850573
LQAS01000001
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
1021186
1021261
+
Thr
CGT
[ENA]
¡û
>W1610921513
LSUO01000009
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
12368
12443
+
Thr
CGT
[ENA]
¡û
>W1630013413
LMMT01000001
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
396759
396834
+
Thr
CGT
[ENA]
¡û
>W1730015835
LMMT01000001
Betaproteobacteria
Pseudorhodoferax sp. Leaf265 [LMMT]
396759
396834
+
Thr
CGT
[ENA]
¡û
>W1710082544
BDHG01000007
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
136745
136820
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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