This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237684 (47 seq.)
>W1710907000
LNOL01000036
Betaproteobacteria
Alcaligenes faecalis [LNOL]
159029
159104
+
Thr
TGT
[ENA]
¡û
>W1710995934
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
165031
164956
-
Thr
TGT
[ENA]
¡û
>W1711710494
MSZN01000007
Betaproteobacteria
Alcaligenes faecalis [MSZN]
2495
2570
+
Thr
TGT
[ENA]
¡û
>W1711710568
MSZO01000012
Betaproteobacteria
Alcaligenes faecalis [MSZO]
115635
115560
-
Thr
TGT
[ENA]
¡û
>W1711710592
MSZP01000002
Betaproteobacteria
Alcaligenes faecalis [MSZP]
211838
211763
-
Thr
TGT
[ENA]
¡û
>W1711710674
MSZQ01000021
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
1069
1144
+
Thr
TGT
[ENA]
¡û
>W1711710723
MSZR01000018
Betaproteobacteria
Alcaligenes faecalis [MSZR]
83573
83498
-
Thr
TGT
[ENA]
¡û
>W1711711904
MTBI01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
687772
687847
+
Thr
TGT
[ENA]
¡û
>C171098254
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
1749413
1749338
-
Thr
TGT
-
¡û
>C171115516
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3737288
3737363
+
Thr
TGT
-
¡û
>W131051751
AMXV01000007
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
17432
17357
-
Thr
TGT
[ENA]
¡û
>W131223063
AUBT01000006
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
133991
133916
-
Thr
TGT
[ENA]
¡û
>W141104431
AVOG02000045
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
260248
260323
+
Thr
TGT
[ENA]
¡û
>W141237732
BBJQ01000006
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
151434
151359
-
Thr
TGT
[ENA]
¡û
>WENV183733806
PJTY01029724
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
323
398
+
Thr
TGT
[ENA]
¢þ
>WENV170645931
JQGF01001149
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2435
2510
+
Thr
TGT
[ENA]
¢þ
>WENV170646001
JQGF01005698
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
3462
3387
-
Thr
TGT
[ENA]
¢þ
>WENV170655133
JTFN01007028
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
141
216
+
Thr
TGT
[ENA]
¢þ
>WENV170656256
JTFO01007297
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
8305
8230
-
Thr
TGT
[ENA]
¢þ
>WENV170656721
JTFO01038075
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1146
1071
-
Thr
TGT
[ENA]
¢þ
>WENV170656901
JTFO01058241
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
141
216
+
Thr
TGT
[ENA]
¢þ
>WENV170656959
JTFO01064797
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
1074
1149
+
Thr
TGT
[ENA]
¢þ
>WENV170706224
LNAP01001749
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
19531
19606
+
Thr
TGT
[ENA]
¢þ
>WENV170706703
LNAP01005745
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8283
8358
+
Thr
TGT
[ENA]
¢þ
>WENV170707316
LNAP01017257
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23
98
+
Thr
TGT
[ENA]
¢þ
>WENV170707996
LNAP01043246
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1899
1824
-
Thr
TGT
[ENA]
¢þ
>WENV170965905
MTEV01009198
[MTEV] soil metagenome; soil bioaugmentation with soil previously exposed to atrazine
1480
1405
-
Thr
TGT
[ENA]
¢þ
>C181053235
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
3764583
3764658
+
Thr
TGT
-
¡û
>C181088593
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3489809
3489884
+
Thr
TGT
-
¡û
>C191085272
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
4031161
4031236
+
Thr
TGT
-
¡û
>C191091144
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
2231342
2231417
+
Thr
TGT
-
¡û
>C191113933
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
691581
691656
+
Thr
TGT
-
¡û
>C191149630
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1615471
1615546
+
Thr
TGT
-
¡û
>W1810062074
PDNV01000001
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
115048
115123
+
Thr
TGT
[ENA]
¡û
>W1810062134
PDNW01000006
Betaproteobacteria
Pollutimonas subterranea JR1/69-3-13 [PDNW]
158218
158143
-
Thr
TGT
[ENA]
¡û
>W1810583905
QEXO01000003
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
532178
532253
+
Thr
TGT
[ENA]
¡û
>W1810721017
QNRQ01000014
Betaproteobacteria
Eoetvoesiella caeni DSM 25520 [QNRQ]
493
418
-
Thr
TGT
[ENA]
¡û
>W1511321013
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
748295
748220
-
Thr
TGT
[ENA]
¡û
>W1511537442
JZBR01000001
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
189924
189849
-
Thr
TGT
[ENA]
¡û
>C161051368
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
2653149
2653074
-
Thr
TGT
[Ensembl]
¡û
>W121091231
AKMR01000019
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
3610
3535
-
Thr
TGT
[ENA]
¡û
>W1610093569
CYTB01000005
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
192205
192280
+
Thr
TGT
[ENA]
¡û
>W1610766014
LNOL01000036
Betaproteobacteria
Alcaligenes faecalis [LNOL]
159029
159104
+
Thr
TGT
[ENA]
¡û
>W1610850591
LQAS01000003
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
165031
164956
-
Thr
TGT
[ENA]
¡û
>W1610921532
LSUO01000020
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
160251
160326
+
Thr
TGT
[ENA]
¡û
>W1710082536
BDHG01000004
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
151561
151486
-
Thr
TGT
[ENA]
¡û
>W1710586405
FQXE01000004
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
228516
228591
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK