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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237689 (78 seq.)
>W1710919587
LNXT01000025
Gammaproteobacteria
Legionella birminghamensis [LNXT]
44610
44685
+
Lys
CTT
[ENA]
¡û
>W1710919664
LNXV01000029
Gammaproteobacteria
Legionella brunensis [LNXV]
432210
432135
-
Lys
CTT
[ENA]
¡û
>W1710919781
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
222102
222177
+
Lys
TTT
[ENA]
¡û
>W1710919782
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
222229
222304
+
Lys
TTT
[ENA]
¡û
>W1710919784
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
315461
315536
+
Lys
CTT
[ENA]
¡û
>W1710919910
LNYB01000064
Gammaproteobacteria
Legionella feeleii [LNYB]
16090
16015
-
Lys
CTT
[ENA]
¡û
>W1710920081
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
1084077
1084152
+
Lys
CTT
[ENA]
¡û
>W1710920128
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
413469
413394
-
Lys
CTT
[ENA]
¡û
>W1710920175
LNYI01000012
Gammaproteobacteria
Legionella lansingensis [LNYI]
38735
38660
-
Lys
CTT
[ENA]
¡û
>W1710920227
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2630630
2630705
+
Lys
CTT
[ENA]
¡û
>W1710920280
LNYK01000015
Gammaproteobacteria
Legionella londiniensis [LNYK]
3680
3605
-
Lys
TTT
[ENA]
¡û
>W1710920281
LNYK01000015
Gammaproteobacteria
Legionella londiniensis [LNYK]
3503
3428
-
Lys
TTT
[ENA]
¡û
>W1710920297
LNYL01000001
Gammaproteobacteria
Legionella maceachernii [LNYL]
8061
7986
-
Lys
CTT
[ENA]
¡û
>W1710920340
LNYM01000004
Gammaproteobacteria
Legionella micdadei [LNYM]
10490
10415
-
Lys
CTT
[ENA]
¡û
>W1710920433
LNYO01000022
Gammaproteobacteria
Legionella nautarum [LNYO]
36486
36411
-
Lys
CTT
[ENA]
¡û
>W1710920473
LNYP01000019
Gammaproteobacteria
Legionella oakridgensis [LNYP]
150653
150728
+
Lys
TTT
[ENA]
¡û
>W1710920474
LNYP01000019
Gammaproteobacteria
Legionella oakridgensis [LNYP]
150824
150899
+
Lys
TTT
[ENA]
¡û
>W1710920578
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
889689
889614
-
Lys
CTT
[ENA]
¡û
>W1710920982
LNZC01000006
Gammaproteobacteria
Legionella worsleiensis [LNZC]
21374
21299
-
Lys
TTT
[ENA]
¡û
>W1710920983
LNZC01000006
Gammaproteobacteria
Legionella worsleiensis [LNZC]
21245
21170
-
Lys
TTT
[ENA]
¡û
>W1711252427
LYOZ01000053
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
12635
12710
+
Lys
CTT
[ENA]
¡û
>W1711505250
MKVI01000050
Gammaproteobacteria
Legionella sp. 40-6 [MKVI]
2114
2039
-
Lys
TTT
[ENA]
¡û
>W1711505251
MKVI01000050
Gammaproteobacteria
Legionella sp. 40-6 [MKVI]
2009
1934
-
Lys
TTT
[ENA]
¡û
>C171110834
CP020614
Gammaproteobacteria
Legionella micdadei NZ2015 [CP020614]
2482157
2482082
-
Lys
CTT
-
¡û
>C171110874
CP020615
Gammaproteobacteria
Legionella micdadei NZ2016 [CP020615]
2521202
2521127
-
Lys
CTT
-
¡û
>W141220999
AZYK01000089
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
438
363
-
Lys
TTT
[ENA]
¡û
>W141221000
AZYK01000089
Gammaproteobacteria
Legionella oakridgensis RV-2-2007 [AZYK]
267
192
-
Lys
TTT
[ENA]
¡û
>W141245609
CALJ01000221
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
23
98
+
Lys
CTT
[ENA]
¡û
>W141273136
CCSB01000002
Gammaproteobacteria
Legionella massiliensis [CCSB]
410328
410252
-
Lys
CTT
[ENA]
¡û
>W141273894
CCVW01000002
Gammaproteobacteria
Legionella massiliensis [CCVW]
410328
410252
-
Lys
CTT
[ENA]
¡û
>WENV170455110
CEVA01084646
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
126
-
Lys
TTT
[ENA]
¢þ
>C181225070
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
2107133
2107058
-
Lys
CTT
-
¡û
>C191209842
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
2288395
2288320
-
Lys
CTT
-
¡û
>W141558780
JHWF01000007
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
87729
87804
+
Lys
CTT
[ENA]
¡û
>W141561021
JHYC01000009
Gammaproteobacteria
Legionella fairfieldensis ATCC 49588 [JHYC]
1019
944
-
Lys
CTT
[ENA]
¡û
>W141730015
JNIA01000010
Gammaproteobacteria
Legionella wadsworthii DSM 21896 = ATCC 33877 [JNIA]
129885
129810
-
Lys
TTT
[ENA]
¡û
>C141003233
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
2425490
2425415
-
Lys
TTT
[Ensembl]
¡û
>C141003234
CP004006
Gammaproteobacteria
Legionella oakridgensis ATCC 33761 = DSM 21215 [CP004006]
2425319
2425244
-
Lys
TTT
[Ensembl]
¡û
>W1910814182
MVJN01000005
Gammaproteobacteria
Legionella quinlivanii ID143958 [MVJN]
307249
307324
+
Lys
CTT
[ENA]
¡û
>C151103433
LN614830
Gammaproteobacteria
Legionella micdadei ATCC 33218 [LN614830]
894830
894905
+
Lys
CTT
[Ensembl]
¡û
>C151103864
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
970097
970172
+
Lys
CTT
[Ensembl]
¡û
>W1610122406
CZVG01000012
Gammaproteobacteria
Legionella saoudiensis LH-SWC [CZVG]
250261
250186
-
Lys
TTT
[ENA]
¡û
>W1610122407
CZVG01000012
Gammaproteobacteria
Legionella saoudiensis LH-SWC [CZVG]
250141
250066
-
Lys
TTT
[ENA]
¡û
>W1610580146
LBAX01000019
Gammaproteobacteria
Legionella jordanis [LBAX]
2487
2412
-
Lys
CTT
[ENA]
¡û
>W1610583906
LBHK01000046
Gammaproteobacteria
Legionella feeleii [LBHK]
6086
6161
+
Lys
CTT
[ENA]
¡û
>W1610584589
LCUA01000007
Gammaproteobacteria
Legionella oakridgensis [LCUA]
110775
110850
+
Lys
TTT
[ENA]
¡û
>W1610584590
LCUA01000007
Gammaproteobacteria
Legionella oakridgensis [LCUA]
110946
111021
+
Lys
TTT
[ENA]
¡û
>W1610584624
LCUB01000001
Gammaproteobacteria
Legionella micdadei [LCUB]
363341
363266
-
Lys
CTT
[ENA]
¡û
>W1610777485
LNXT01000025
Gammaproteobacteria
Legionella birminghamensis [LNXT]
44610
44685
+
Lys
CTT
[ENA]
¡û
>W1610777562
LNXV01000029
Gammaproteobacteria
Legionella brunensis [LNXV]
432210
432135
-
Lys
CTT
[ENA]
¡û
>W1610777682
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
315461
315536
+
Lys
CTT
[ENA]
¡û
>W1610777808
LNYB01000064
Gammaproteobacteria
Legionella feeleii [LNYB]
16090
16015
-
Lys
CTT
[ENA]
¡û
>W1610777979
LNYF01000020
Gammaproteobacteria
Legionella hackeliae [LNYF]
1084077
1084152
+
Lys
CTT
[ENA]
¡û
>W1610778026
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
413469
413394
-
Lys
CTT
[ENA]
¡û
>W1610778073
LNYI01000012
Gammaproteobacteria
Legionella lansingensis [LNYI]
38735
38660
-
Lys
CTT
[ENA]
¡û
>W1610778125
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2630630
2630705
+
Lys
CTT
[ENA]
¡û
>W1610778178
LNYK01000015
Gammaproteobacteria
Legionella londiniensis [LNYK]
3680
3605
-
Lys
TTT
[ENA]
¡û
>W1610778179
LNYK01000015
Gammaproteobacteria
Legionella londiniensis [LNYK]
3503
3428
-
Lys
TTT
[ENA]
¡û
>W1610778195
LNYL01000001
Gammaproteobacteria
Legionella maceachernii [LNYL]
8061
7986
-
Lys
CTT
[ENA]
¡û
>W1610778238
LNYM01000004
Gammaproteobacteria
Legionella micdadei [LNYM]
10490
10415
-
Lys
CTT
[ENA]
¡û
>W1610778331
LNYO01000022
Gammaproteobacteria
Legionella nautarum [LNYO]
36486
36411
-
Lys
CTT
[ENA]
¡û
>W1610778371
LNYP01000019
Gammaproteobacteria
Legionella oakridgensis [LNYP]
150653
150728
+
Lys
TTT
[ENA]
¡û
>W1610778372
LNYP01000019
Gammaproteobacteria
Legionella oakridgensis [LNYP]
150824
150899
+
Lys
TTT
[ENA]
¡û
>W1610778476
LNYS01000006
Gammaproteobacteria
Legionella quinlivanii [LNYS]
889689
889614
-
Lys
CTT
[ENA]
¡û
>W1610778880
LNZC01000006
Gammaproteobacteria
Legionella worsleiensis [LNZC]
21374
21299
-
Lys
TTT
[ENA]
¡û
>W1610778881
LNZC01000006
Gammaproteobacteria
Legionella worsleiensis [LNZC]
21245
21170
-
Lys
TTT
[ENA]
¡û
>W1611017215
LYOZ01000053
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
12635
12710
+
Lys
CTT
[ENA]
¡û
>W1710124073
CZVG01000012
Gammaproteobacteria
Legionella saoudiensis LH-SWC [CZVG]
250261
250186
-
Lys
TTT
[ENA]
¡û
>W1710124074
CZVG01000012
Gammaproteobacteria
Legionella saoudiensis LH-SWC [CZVG]
250141
250066
-
Lys
TTT
[ENA]
¡û
>W1710507776
FMVN01000012
Gammaproteobacteria
Legionella micdadei [FMVN]
10603
10528
-
Lys
CTT
[ENA]
¡û
>W1710539369
FNVH01000003
Gammaproteobacteria
Legionella quinlivanii DSM 21216 [FNVH]
325292
325367
+
Lys
CTT
[ENA]
¡û
>W1710568974
FOTZ01000010
Gammaproteobacteria
Legionella jamestowniensis DSM 19215 [FOTZ]
45439
45514
+
Lys
CTT
[ENA]
¡û
>W1710601535
FUXJ01000018
Gammaproteobacteria
Legionella maceachernii [FUXJ]
8296
8221
-
Lys
CTT
[ENA]
¡û
>W1710699158
LBAX01000019
Gammaproteobacteria
Legionella jordanis [LBAX]
2487
2412
-
Lys
CTT
[ENA]
¡û
>W1710703054
LBHK01000046
Gammaproteobacteria
Legionella feeleii [LBHK]
6086
6161
+
Lys
CTT
[ENA]
¡û
>W1710703780
LCUA01000007
Gammaproteobacteria
Legionella oakridgensis [LCUA]
110775
110850
+
Lys
TTT
[ENA]
¡û
>W1710703781
LCUA01000007
Gammaproteobacteria
Legionella oakridgensis [LCUA]
110946
111021
+
Lys
TTT
[ENA]
¡û
>W1710703815
LCUB01000001
Gammaproteobacteria
Legionella micdadei [LCUB]
363341
363266
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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