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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237697 (85 seq.)
>W1710891813
LNDB01000007
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
96681
96606
-
Phe
GAA
[ENA]
¡û
>W1710891820
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
3018
3093
+
Phe
GAA
[ENA]
¡û
>W1710926983
LOEW01000019
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
6718
6793
+
Phe
GAA
[ENA]
¡û
>W1710927087
LOEZ01000034
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
5772
5847
+
Phe
GAA
[ENA]
¡û
>W1710927099
LOEZ01000061
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
43132
43207
+
Phe
GAA
[ENA]
¡û
>W1710927107
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
36962
36887
-
Phe
GAA
[ENA]
¡û
>W1711312251
MASS01000038
Bacillota
Desulfosporosinus sp. BG [MASS]
22377
22302
-
Phe
GAA
[ENA]
¡û
>W1711312268
MASS01000047
Bacillota
Desulfosporosinus sp. BG [MASS]
31064
30989
-
Phe
GAA
[ENA]
¡û
>W1711342458
MCHF01000040
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
23328
23253
-
Phe
GAA
[ENA]
¡û
>W1711342470
MCHF01000056
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
7406
7331
-
Phe
GAA
[ENA]
¡û
>W1711510562
MLBF01000001
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
169844
169769
-
Phe
GAA
[ENA]
¡û
>W1711510580
MLBF01000054
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
2372
2447
+
Phe
GAA
[ENA]
¡û
>W1711926240
NADJ01000002
Bacillota
Desulfosporosinus sp. FKB [NADJ]
4695
4770
+
Phe
GAA
[ENA]
¡û
>W1711926281
NADJ01000036
Bacillota
Desulfosporosinus sp. FKB [NADJ]
200879
200804
-
Phe
GAA
[ENA]
¡û
>W1711932725
NAHZ01000006
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
25136
25061
-
Phe
GAA
[ENA]
¡û
>W1711932757
NAHZ01000032
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
123912
123987
+
Phe
GAA
[ENA]
¡û
>W131162530
AQYY01000008
Bacillota
Dehalobacter sp. FTH1 [AQYY]
1164
1239
+
Phe
GAA
[ENA]
¡û
>W131162557
AQYY01000026
Bacillota
Dehalobacter sp. FTH1 [AQYY]
3043
2968
-
Phe
GAA
[ENA]
¡û
>W141088318
AUUR01000179
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
74050
73975
-
Phe
GAA
[ENA]
¡û
>W141246545
CANE01000002
Bacillota
Dehalobacter restrictus E1 [CANE]
141457
141532
+
Phe
GAA
[ENA]
¡û
>W141246565
CANE01000029
Bacillota
Dehalobacter restrictus E1 [CANE]
8512
8587
+
Phe
GAA
[ENA]
¡û
>W141246603
CANF01000022
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
8511
8586
+
Phe
GAA
[ENA]
¡û
>W141246674
CANF01002314
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
141621
141696
+
Phe
GAA
[ENA]
¡û
>WENV183673246
ORJL011259091
[ORJL] groundwater metagenome; groundwater
160
85
-
Phe
GAA
[ENA]
¢þ
>WENV170658846
JUEG02001194
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
27774
27699
-
Phe
GAA
[ENA]
¢þ
>WENV170658882
JUEG02001273
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
3186
3261
+
Phe
GAA
[ENA]
¢þ
>WENV170658912
JUEG02001343
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
133509
133584
+
Phe
GAA
[ENA]
¢þ
>WENV170784095
MCHG01000014
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
135571
135646
+
Phe
GAA
[ENA]
¢þ
>WENV170784234
MCHG01000181
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
29278
29203
-
Phe
GAA
[ENA]
¢þ
>C141011724
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
235732
235807
+
Phe
GAA
[Ensembl]
¡û
>C141011758
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
2919641
2919566
-
Phe
GAA
[Ensembl]
¡û
>W1910647164
LXPC01000012
Bacillota
Dehalobacter sp. MCB1 [LXPC]
35086
35161
+
Phe
GAA
[ENA]
¡û
>W1910647181
LXPC01000019
Bacillota
Dehalobacter sp. MCB1 [LXPC]
8820
8895
+
Phe
GAA
[ENA]
¡û
>W1911608686
PNXX01000005
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
46007
45932
-
Phe
GAA
[ENA]
¡û
>W1911608703
PNXX01000009
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
308462
308387
-
Phe
GAA
[ENA]
¡û
>W1911613530
POSF01000002
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
99375
99450
+
Phe
GAA
[ENA]
¡û
>W1911613571
POSF01000021
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
48661
48586
-
Phe
GAA
[ENA]
¡û
>W1810047179
OMOF01000119
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
11631
11556
-
Phe
GAA
[ENA]
¡û
>W1810047198
OMOF01000956
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
1765
1690
-
Phe
GAA
[ENA]
¡û
>C151016303
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
103507
103582
+
Phe
GAA
[Ensembl]
¡û
>C151016318
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
3144960
3144885
-
Phe
GAA
[Ensembl]
¡û
>ENV09001820
ACQI01011205
Hydrothermal vent metagenome LCHCB.C1
1
76
+
Phe
GAA
[ENA]
¡û
>W1511187114
JMGA01000022
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
19128
19053
-
Phe
GAA
[ENA]
¡û
>W1511187125
JMGA01000040
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
27103
27028
-
Phe
GAA
[ENA]
¡û
>C11120615
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
252557
252632
+
Phe
GAA
[Ensembl]
¡û
>C11120634
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
3367359
3367284
-
Phe
GAA
[Ensembl]
¡û
>W1511430032
JUEE01000046
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
93943
94018
+
Phe
GAA
[ENA]
¡û
>W1511430063
JUEE01000168
Bacillota
Desulfosporosinus sp. BICA1-9 [JUEE]
26375
26300
-
Phe
GAA
[ENA]
¡û
>W1511533672
JYNH01000035
Bacillota
Desulfosporosinus sp. I2 [JYNH]
22688
22613
-
Phe
GAA
[ENA]
¡û
>W1511533687
JYNH01000095
Bacillota
Desulfosporosinus sp. I2 [JYNH]
4750
4825
+
Phe
GAA
[ENA]
¡û
>W1511564570
LADV01000225
Bacillota
Peptococcaceae bacterium BRH_c23 [LADV]
12683
12608
-
Phe
GAA
[ENA]
¡û
>W1511644701
LDXJ01000015
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
974
899
-
Phe
GAA
[ENA]
¡û
>W1511646010
LDZY01000003
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
251057
250982
-
Phe
GAA
[ENA]
¡û
>W1511646030
LDZY01000021
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
3662
3737
+
Phe
GAA
[ENA]
¡û
>W11177261
AGAF01000148
Bacillota
Desulfosporosinus sp. OT [AGAF]
98513
98438
-
Phe
GAA
[ENA]
¡û
>W11177285
AGAF01000222
Bacillota
Desulfosporosinus sp. OT [AGAF]
23180
23105
-
Phe
GAA
[ENA]
¡û
>W11181351
AGJA01000012
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
3386
3311
-
Phe
GAA
[ENA]
¡û
>W11181362
AGJA01000015
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
5132
5207
+
Phe
GAA
[ENA]
¡û
>W11181405
AGJB01000007
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
8320
8395
+
Phe
GAA
[ENA]
¡û
>W11181418
AGJB01000026
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
915
840
-
Phe
GAA
[ENA]
¡û
>C121005943
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
117903
117978
+
Phe
GAA
[Ensembl]
¡û
>C121005961
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
5823273
5823198
-
Phe
GAA
[Ensembl]
¡û
>C121014782
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
112592
112667
+
Phe
GAA
[Ensembl]
¡û
>C121014808
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
4829905
4829830
-
Phe
GAA
[Ensembl]
¡û
>C121014860
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
114144
114219
+
Phe
GAA
[Ensembl]
¡û
>C121014876
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
4884856
4884781
-
Phe
GAA
[Ensembl]
¡û
>W121010449
AGJG01000005
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
133934
134009
+
Phe
GAA
[ENA]
¡û
>W121010476
AGJG01000031
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
42481
42406
-
Phe
GAA
[ENA]
¡û
>W121036132
AHLV01000001
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
134942
135017
+
Phe
GAA
[ENA]
¡û
>W121036184
AHLV01000004
Bacillota
Desulfosporosinus youngiae DSM 17734 [AHLV]
311175
311100
-
Phe
GAA
[ENA]
¡û
>C131008520
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
3045607
3045532
-
Phe
GAA
[Ensembl]
¡û
>C131008548
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2050019
2049944
-
Phe
GAA
[Ensembl]
¡û
>C131008571
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
3067702
3067627
-
Phe
GAA
[Ensembl]
¡û
>C131008599
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2079800
2079725
-
Phe
GAA
[Ensembl]
¡û
>W1610752178
LNDB01000007
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
96681
96606
-
Phe
GAA
[ENA]
¡û
>W1610752185
LNDB01000017
Bacillota
Candidatus Dichloromethanomonas elyunquensis RM [LNDB]
3018
3093
+
Phe
GAA
[ENA]
¡û
>W1610784525
LOEW01000019
Bacillota
Desulfosporosinus sp. BRH_c37 [LOEW]
6718
6793
+
Phe
GAA
[ENA]
¡û
>W1610784629
LOEZ01000034
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
5772
5847
+
Phe
GAA
[ENA]
¡û
>W1610784641
LOEZ01000061
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
43132
43207
+
Phe
GAA
[ENA]
¡û
>W1610784649
LOEZ01000081
Bacillota
Gracilibacter sp. BRH_c7a [LOEZ]
36962
36887
-
Phe
GAA
[ENA]
¡û
>W1610889366
LRPL01000382
Bacillota
Anaerococcus hydrogenalis [LRPL]
77
2
-
Phe
GAA
[ENA]
¡û
>W1710516459
FNCP01000006
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
132189
132264
+
Phe
GAA
[ENA]
¡û
>W1710516499
FNCP01000038
Bacillota
Desulfosporosinus hippei DSM 8344 [FNCP]
3924
3999
+
Phe
GAA
[ENA]
¡û
>W1710586627
FQXJ01000003
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
133173
133248
+
Phe
GAA
[ENA]
¡û
>W1710586672
FQXJ01000036
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
27623
27548
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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