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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237764 (82 seq.)
>W1710797599
LJTB01000031
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1710797601
LJTB01000032
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1710797705
LJTC01000054
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
419
343
-
Ile
GAT
[ENA]
¡û
>W1710797707
LJTC01000066
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
166
242
+
Ile
GAT
[ENA]
¡û
>W1710943683
LOPY01000017
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
259
183
-
Ile
GAT
[ENA]
¡û
>W1711054923
LRUE01000017
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LRUE]
2503
2427
-
Ile
GAT
[ENA]
¡û
>W1711054988
LRUF01000022
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
1623
1699
+
Ile
GAT
[ENA]
¡û
>W1711388815
MEID01000053
Gammaproteobacteria
Ectothiorhodospiraceae bacterium AqS1 [MEID]
2774
2698
-
Ile
GAT
[ENA]
¡û
>C171073859
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
338952
339028
+
Ile
GAT
-
¡û
>C171127833
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
167235
167311
+
Ile
GAT
-
¡û
>C005204
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
167224
167300
+
Ile
GAT
[Ensembl]
¡û
>C016502
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1822
1898
+
Ile
GAT
[Ensembl]
¡û
>C016508
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
298420
298496
+
Ile
GAT
[Ensembl]
¡û
>C016513
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
742633
742709
+
Ile
GAT
[Ensembl]
¡û
>W141027251
AKYP01000181
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
6363
6287
-
Ile
GAT
[ENA]
¡û
>WENV180593676
OCOX01136990
[OCOX] marine metagenome; ENVO:00002010
116
192
+
Ile
GAT
[ENA]
¢þ
>C08003035
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
241208
241284
+
Ile
GAT
[Ensembl]
¡û
>W141254750
CBTH010000001
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
167301
167377
+
Ile
GAT
[ENA]
¡û
>W141260641
CCAH010000002
Gammaproteobacteria
Coxiella burnetii [CCAH]
130767
130843
+
Ile
GAT
[ENA]
¡û
>W141260769
CCAK010000031
Gammaproteobacteria
Coxiella burnetii [CCAK]
13699
13775
+
Ile
GAT
[ENA]
¡û
>W141260862
CCAM010000005
Gammaproteobacteria
Coxiella burnetii [CCAM]
71066
71142
+
Ile
GAT
[ENA]
¡û
>W141267630
CCNR01000063
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
35617
35541
-
Ile
GAT
[ENA]
¡û
>W141402228
JDVB01000010
Gammaproteobacteria
Pseudoalteromonas lipolytica SCSIO 04301 [JDVB]
425950
425874
-
Ile
GAT
[ENA]
¡û
>WENV170960465
MKWU01030658
[MKWU] sponge metagenome;
1012
936
-
Ile
GAT
[ENA]
¢þ
>WENV170961173
MKWU01091011
[MKWU] sponge metagenome;
1006
930
-
Ile
GAT
[ENA]
¢þ
>C181169211
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
24677
24753
+
Ile
GAT
-
¡û
>C181169228
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
309248
309324
+
Ile
GAT
-
¡û
>C181169272
CP028897
Gammaproteobacteria
Dongshaea marina DM2 [CP028897]
4525560
4525484
-
Ile
GAT
-
¡û
>C191091562
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
92735
92659
-
Ile
GAT
-
¡û
>C191134907
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
441254
441330
+
Ile
GAT
-
¡û
>W09105779
AAQS01000003
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
155030
155106
+
Ile
GAT
[ENA]
¡û
>W09105822
AAQS01000032
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
986
1062
+
Ile
GAT
[ENA]
¡û
>W09105825
AAQS01000034
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
618
694
+
Ile
GAT
[ENA]
¡û
>W141810517
JPVV01000013
Gammaproteobacteria
Coxiella burnetii [JPVV]
13536
13612
+
Ile
GAT
[ENA]
¡û
>W1911119025
NOLO01000002
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
129360
129436
+
Ile
GAT
[ENA]
¡û
>W1911119101
NOLP01000035
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
179104
179028
-
Ile
GAT
[ENA]
¡û
>W1911119109
NOLQ01000002
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
129360
129436
+
Ile
GAT
[ENA]
¡û
>W1911119193
NOLS01000002
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
129357
129433
+
Ile
GAT
[ENA]
¡û
>W1911119277
NOLU01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
129357
129433
+
Ile
GAT
[ENA]
¡û
>W1911119319
NOLV01000002
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
129357
129433
+
Ile
GAT
[ENA]
¡û
>W1911136618
NOVF01000002
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
129357
129433
+
Ile
GAT
[ENA]
¡û
>W1911136660
NOVG01000002
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
129288
129364
+
Ile
GAT
[ENA]
¡û
>W1911136744
NOVI01000003
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
105613
105689
+
Ile
GAT
[ENA]
¡û
>W1911136786
NOVJ01000002
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
129360
129436
+
Ile
GAT
[ENA]
¡û
>W1911798930
QYSE01000016
Gammaproteobacteria
Pseudoalteromonas profundi MNAD 1.6 [QYSE]
179
255
+
Ile
GAT
[ENA]
¡û
>W1911811063
QZCH01000058
Gammaproteobacteria
Motilimonas pumila PLHSC7-2 [QZCH]
60
136
+
Ile
GAT
[ENA]
¡û
>W1810059844
PDLP01000011
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
14089
14165
+
Ile
GAT
[ENA]
¡û
>W1810156925
PJBP01000038
Gammaproteobacteria
Psychromonas sp. MB-3u-54 [PJBP]
402
326
-
Ile
GAT
[ENA]
¡û
>W1810235676
PPFM01000003
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
114735
114811
+
Ile
GAT
[ENA]
¡û
>W1810235760
PPFO01000003
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
130740
130816
+
Ile
GAT
[ENA]
¡û
>W1810235786
PPFP01000002
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
20843
20767
-
Ile
GAT
[ENA]
¡û
>W1810235844
PPFQ01000003
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
130741
130817
+
Ile
GAT
[ENA]
¡û
>W1810248975
PQBX01000009
Gammaproteobacteria
Pseudoalteromonas sp. T1lg21 [PQBX]
119
195
+
Ile
GAT
[ENA]
¡û
>W1810249813
PQCG01000012
Gammaproteobacteria
Pseudoalteromonas sp. T1lg122 [PQCG]
8
84
+
Ile
GAT
[ENA]
¡û
>W1810249823
PQCG01000027
Gammaproteobacteria
Pseudoalteromonas sp. T1lg122 [PQCG]
374
298
-
Ile
GAT
[ENA]
¡û
>W1810249825
PQCG01000028
Gammaproteobacteria
Pseudoalteromonas sp. T1lg122 [PQCG]
119
195
+
Ile
GAT
[ENA]
¡û
>W1810471898
QAGM01000058
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
214
290
+
Ile
GAT
[ENA]
¡û
>W1810471900
QAGM01000059
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
621
545
-
Ile
GAT
[ENA]
¡û
>W1810471905
QAGM01000070
Gammaproteobacteria
Oceanimonas marisflavi 102-Na3 [QAGM]
216
292
+
Ile
GAT
[ENA]
¡û
>C151102358
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
167261
167337
+
Ile
GAT
-
¡û
>C151102505
LM655252
Gammaproteobacteria
Candidatus Evansia muelleri [LM655252]
301267
301343
+
Ile
GAT
[Ensembl]
¡û
>W1510060730
CCXO01000001
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
316874
316950
+
Ile
GAT
[ENA]
¡û
>W1510064610
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
179392
179468
+
Ile
GAT
[ENA]
¡û
>C11109028
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
40981
41057
+
Ile
GAT
[Ensembl]
¡û
>C11109035
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
333938
334014
+
Ile
GAT
[Ensembl]
¡û
>C11109111
CP002209
Gammaproteobacteria
Ferrimonas balearica DSM 9799 [CP002209]
2655887
2655811
-
Ile
GAT
[Ensembl]
¡û
>W1511555100
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
199499
199575
+
Ile
GAT
[ENA]
¡û
>C161017331
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
337054
337130
+
Ile
GAT
[Ensembl]
¡û
>W121025047
AHCA01000055
Gammaproteobacteria
Pseudoalteromonas haloplanktis ATCC 14393 [AHCA]
426
350
-
Ile
GAT
[ENA]
¡û
>WENV067112
AACY023675929
Marine microbial communities from Global Ocean Sampling (GOS)
517
595
+
Ile
GAT
[ENA]
>W1610620903
LHPH01000072
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
533
457
-
Ile
GAT
[ENA]
¡û
>W1610635651
LITL01000057
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
806
730
-
Ile
GAT
[ENA]
¡û
>W1610661556
LJTB01000031
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1610661558
LJTB01000032
Gammaproteobacteria
Pseudoalteromonas sp. UCD-33C [LJTB]
169
245
+
Ile
GAT
[ENA]
¡û
>W1610661662
LJTC01000054
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
419
343
-
Ile
GAT
[ENA]
¡û
>W1610661664
LJTC01000066
Gammaproteobacteria
Pseudoalteromonas lipolytica [LJTC]
166
242
+
Ile
GAT
[ENA]
¡û
>W1610799983
LOPY01000017
Gammaproteobacteria
Pseudoalteromonas sp. XI10 [LOPY]
259
183
-
Ile
GAT
[ENA]
¡û
>W1610895969
LRUE01000017
Gammaproteobacteria
Pseudoalteromonas shioyasakiensis [LRUE]
2503
2427
-
Ile
GAT
[ENA]
¡û
>W1610896034
LRUF01000022
Gammaproteobacteria
Pseudoalteromonas arabiensis [LRUF]
1623
1699
+
Ile
GAT
[ENA]
¡û
>ENV002919
AY934371
Environmental sample from ENV division of INSDC
117
195
+
Ile
GAT
[ENA]
>W1710748770
LHPH01000072
Gammaproteobacteria
Pseudoalteromonas porphyrae [LHPH]
533
457
-
Ile
GAT
[ENA]
¡û
>W1710770279
LITL01000057
Gammaproteobacteria
Pseudoalteromonas porphyrae [LITL]
806
730
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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