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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237893 (90 seq.)
>W1711120613
LUGK01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
181368
181296
-
Gln
CTG
[ENA]
¡û
>W1711167785
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
315026
314954
-
Gln
CTG
[ENA]
¡û
>W1711167853
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
314972
314900
-
Gln
CTG
[ENA]
¡û
>W1711185032
LWNA01000067
Bacillota
Lactobacillus sp. HMSC08B12 [LWNA]
21551
21479
-
Gln
CTG
[ENA]
¡û
>W1711665949
MRBF01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [MRBF]
1098163
1098091
-
Gln
CTG
[ENA]
¡û
>W1711678784
MRUN01000012
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [MRUN]
749342
749414
+
Gln
CTG
[ENA]
¡û
>C171048657
CP016393
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND04 [CP016393]
380027
380099
+
Gln
CTG
-
¡û
>C171074173
CP018156
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3035 [CP018156]
960074
960146
+
Gln
CTG
-
¡û
>C171075509
CP018215
Bacillota
Lactobacillus delbrueckii subsp. lactis KCCM 34717 [CP018215]
1136428
1136500
+
Gln
CTG
-
¡û
>C171075636
CP018216
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii KCTC 13731 [CP018216]
609430
609358
-
Gln
CTG
-
¡û
>C171075730
CP018217
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [CP018217]
626968
626896
-
Gln
CTG
-
¡û
>C171075816
CP018218
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [CP018218]
951754
951682
-
Gln
CTG
-
¡û
>C171081405
CP018614
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [CP018614]
613686
613614
-
Gln
CTG
-
¡û
>C171089477
CP019120
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus DSM 20080 [CP019120]
579800
579728
-
Gln
CTG
-
¡û
>C171116214
CP021136
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii TUA4408L [CP021136]
1679659
1679587
-
Gln
CTG
-
¡û
>W131204323
ATBQ01000105
Bacillota
Lactobacillus delbrueckii subsp. lactis CRL581 [ATBQ]
33710
33782
+
Gln
CTG
[ENA]
¡û
>C011434
CR954253
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [CR954253]
590716
590644
-
Gln
CTG
[Ensembl]
¡û
>C011589
CP000412
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [CP000412]
584858
584786
-
Gln
CTG
[Ensembl]
¡û
>W141037917
ALPY01000066
Bacillota
Lactobacillus delbrueckii ZN7a-9 [ALPY]
76035
75963
-
Gln
CTG
[ENA]
¡û
>WENV181659870
OGOF01000919
[OGOF] human gut metagenome; faeces
18260
18188
-
Gln
CTG
[ENA]
¢þ
>WENV181723789
OGPW01024894
[OGPW] human gut metagenome; faeces
376
304
-
Gln
CTG
[ENA]
¢þ
>WENV182293773
OHWC01014575
[OHWC] human gut metagenome; feces
740
668
-
Gln
CTG
[ENA]
¢þ
>W141227998
BALP01000001
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii JCM 1012 [BALP]
72804
72876
+
Gln
CTG
[ENA]
¡û
>WENV182307909
OHXF01026309
[OHXF] human gut metagenome; feces
10
82
+
Gln
CTG
[ENA]
¢þ
>WENV182349950
OIBE01000550
[OIBE] human gut metagenome; feces
5585
5513
-
Gln
CTG
[ENA]
¢þ
>WENV182369988
OICS01000555
[OICS] human gut metagenome; feces
9873
9945
+
Gln
CTG
[ENA]
¢þ
>WENV182381927
OIDR01001260
[OIDR] human gut metagenome; feces
3141
3069
-
Gln
CTG
[ENA]
¢þ
>W141246087
CALZ01000138
Bacillota
Lactobacillus equicursoris 66c [CALZ]
3315
3387
+
Gln
CTG
[ENA]
¡û
>W141246115
CAMA01000058
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
13378
13450
+
Gln
CTG
[ENA]
¡û
>W141246140
CAMA01000146
Bacillota
Lactobacillus equicursoris CIP 110162 [CAMA]
10284
10212
-
Gln
CTG
[ENA]
¡û
>W141264126
CCDV01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDV]
760223
760151
-
Gln
CTG
[ENA]
¡û
>W141264919
CCET01000002
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCET]
588118
588046
-
Gln
CTG
[ENA]
¡û
>W141265003
CCEU01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CCEU]
546391
546319
-
Gln
CTG
[ENA]
¡û
>WENV183122625
OLNW01000003
[OLNW] human gut metagenome; faeces
98182
98254
+
Gln
CTG
[ENA]
¢þ
>WENV183167022
OLOY01018057
[OLOY] human gut metagenome; faeces
597
525
-
Gln
CTG
[ENA]
¢þ
>WENV183298157
OLSM01064256
[OLSM] human gut metagenome; faeces
504
432
-
Gln
CTG
[ENA]
¢þ
>WENV183772269
PPYF01016709
[PPYF] human gut metagenome; stool from patient with Crohn's disease
326
254
-
Gln
CTG
[ENA]
¢þ
>WENV183785824
PPYF01298390
[PPYF] human gut metagenome; stool from patient with Crohn's disease
248202
248130
-
Gln
CTG
[ENA]
¢þ
>C181025023
CP017235
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus L99 [CP017235]
574818
574746
-
Gln
CTG
-
¡û
>C181074571
CP022988
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [CP022988]
952266
952194
-
Gln
CTG
-
¡û
>C181076099
CP023139
Bacillota
Lactobacillus delbrueckii subsp. lactis KCTC 3034 [CP023139]
720531
720459
-
Gln
CTG
-
¡û
>C181221131
LT899687
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LT899687]
577744
577672
-
Gln
CTG
-
¡û
>C191063466
CP029250
Bacillota
Lactobacillus delbrueckii [CP029250]
734550
734478
-
Gln
CTG
-
¡û
>C191089956
CP032451
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus KLDS1.0207 [CP032451]
343895
343967
+
Gln
CTG
-
¡û
>C191224742
LS991409
Bacillota
Lactobacillus delbrueckii subsp. lactis [LS991409]
641402
641330
-
Gln
CTG
-
¡û
>W09101809
AAGQ01000111
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 [AAGQ]
1173
1245
+
Gln
CTG
[ENA]
¡û
>W1910180833
BJLK01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3376 [BJLK]
45570
45498
-
Gln
CTG
[ENA]
¡û
>W1910180902
BJLM01000016
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3534 [BJLM]
17110
17038
-
Gln
CTG
[ENA]
¡û
>W1910180979
BJLO01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis NBRC 3734 [BJLO]
6380
6308
-
Gln
CTG
[ENA]
¡û
>W1910182491
BJMY01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus NBRC 13953 [BJMY]
312195
312123
-
Gln
CTG
[ENA]
¡û
>W1910186275
CCDS01000004
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDS]
97817
97745
-
Gln
CTG
[ENA]
¡û
>W1910186338
CCDT01000001
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDT]
97955
98027
+
Gln
CTG
[ENA]
¡û
>W1910186418
CCDU01000002
Bacillota
Lactobacillus delbrueckii subsp. lactis [CCDU]
100891
100963
+
Gln
CTG
[ENA]
¡û
>W1911631614
PUFG01000042
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii DSM 26046 [PUFG]
76363
76291
-
Gln
CTG
[ENA]
¡û
>W1911702047
QNXB01000001
Bacillota
Lactobacillus delbrueckii TJA31 [QNXB]
98675
98747
+
Gln
CTG
[ENA]
¡û
>W1810000512
BEWJ01000023
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii NBRC 3202 [BEWJ]
20067
20139
+
Gln
CTG
[ENA]
¡û
>W1810190922
PKKE01000034
Bacillota
Lactobacillus delbrueckii UMB0003 [PKKE]
19832
19760
-
Gln
CTG
[ENA]
¡û
>W1810445114
PZKI01000003
Bacillota
Lactobacillus delbrueckii AVK [PZKI]
13184
13112
-
Gln
CTG
[ENA]
¡û
>W1810744642
QOVB01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MBT 92059 [QOVB]
98638
98710
+
Gln
CTG
[ENA]
¡û
>W10124040
AEAT01000087
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
8455
8527
+
Gln
CTG
[ENA]
¡û
>C11112506
CP000156
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus 2038 [CP000156]
582644
582572
-
Gln
CTG
[Ensembl]
¡û
>C11112604
CP002341
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ND02 [CP002341]
633238
633166
-
Gln
CTG
[Ensembl]
¡û
>W11130877
AEAT01000087
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4 [AEAT]
8455
8527
+
Gln
CTG
[ENA]
¡û
>W1511510267
JXRV01000022
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
148606
148534
-
Gln
CTG
[ENA]
¡û
>W1511510333
JXRV01000179
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CRL871 [JXRV]
287
359
+
Gln
CTG
[ENA]
¡û
>W11152254
AEXU01000132
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AEXU]
3365
3293
-
Gln
CTG
[ENA]
¡û
>W1511694243
LGAS01000024
Bacillota
Lactobacillus delbrueckii subsp. indicus JCM 15610 [LGAS]
42053
41981
-
Gln
CTG
[ENA]
¡û
>W1511698294
LGHR01000007
Bacillota
Lactobacillus delbrueckii subsp. sunkii JCM 17838 [LGHR]
268961
268889
-
Gln
CTG
[ENA]
¡û
>C161057633
CP013610
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus MN-BM-F01 [CP013610]
595584
595512
-
Gln
CTG
[Ensembl]
¡û
>W121009765
AGFO01000008
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1632 [AGFO]
166688
166616
-
Gln
CTG
[ENA]
¡û
>W121010047
AGHW01000030
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus CNCM I-1519 [AGHW]
13086
13014
-
Gln
CTG
[ENA]
¡û
>W1610033071
AZCR01000002
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
22753
22681
-
Gln
CTG
[ENA]
¡û
>W1610033718
AZDE01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
3391
3319
-
Gln
CTG
[ENA]
¡û
>W1610034482
AZDU01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
17193
17265
+
Gln
CTG
[ENA]
¡û
>W1610036644
AZFL01000025
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
97944
98016
+
Gln
CTG
[ENA]
¡û
>W1610044399
BBAN01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 [BBAN]
316900
316828
-
Gln
CTG
[ENA]
¡û
>W1610120860
CZPS01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
98607
98679
+
Gln
CTG
[ENA]
¡û
>W1610502767
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
378846
378774
-
Gln
CTG
[ENA]
¡û
>W1610527959
JQAV01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002 DSM 20081 [JQAV]
98352
98424
+
Gln
CTG
[ENA]
¡û
>W1610529652
JQCG01000003
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
20132
20204
+
Gln
CTG
[ENA]
¡û
>W1610931810
LUGK01000053
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LUGK]
181368
181296
-
Gln
CTG
[ENA]
¡û
>W1610977854
LVWX01000004
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWX]
315026
314954
-
Gln
CTG
[ENA]
¡û
>W1610977922
LVWY01000005
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [LVWY]
314972
314900
-
Gln
CTG
[ENA]
¡û
>W1710030343
AZCR01000002
Bacillota
Lactobacillus delbrueckii subsp. delbrueckii DSM 20074 = JCM 1012 [AZCR]
22753
22681
-
Gln
CTG
[ENA]
¡û
>W1710030896
AZDE01000019
Bacillota
Lactobacillus delbrueckii subsp. lactis DSM 20072 [AZDE]
3391
3319
-
Gln
CTG
[ENA]
¡û
>W1710031609
AZDU01000001
Bacillota
Lactobacillus equicursoris DSM 19284 = JCM 14600 = CIP 110162 [AZDU]
17193
17265
+
Gln
CTG
[ENA]
¡û
>W1710033683
AZFL01000025
Bacillota
Lactobacillus delbrueckii subsp. indicus DSM 15996 [AZFL]
97944
98016
+
Gln
CTG
[ENA]
¡û
>W1710123564
CZPS01000001
Bacillota
Lactobacillus delbrueckii subsp. bulgaricus [CZPS]
98607
98679
+
Gln
CTG
[ENA]
¡û
>W1710496166
FLLT01000005
Bacillota
Lactobacillus delbrueckii [FLLT]
378846
378774
-
Gln
CTG
[ENA]
¡û
>W1710631242
JQCG01000003
Bacillota
Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046 [JQCG]
20132
20204
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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