This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237895 (65 seq.)
>W1711126475
LUOQ01000043
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S29_B6 [LUOQ]
2811
2736
-
Arg
CCG
[ENA]
¡û
>W1711126539
LUOR01000067
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 [LUOR]
10179
10254
+
Arg
CCG
[ENA]
¡û
>W1711126550
LUOS01000127
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S35_B9 [LUOS]
2890
2965
+
Arg
CCG
[ENA]
¡û
>W1711126564
LUOT01000007
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S38_B3 [LUOT]
9503
9578
+
Arg
CCG
[ENA]
¡û
>W1711126647
LUOV01000040
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
26300
26225
-
Arg
CCG
[ENA]
¡û
>W1711268654
LZDF01000001
Gammaproteobacteria
Acinetobacter sp. 51m [LZDF]
75184
75259
+
Arg
CCG
[ENA]
¡û
>W1711333375
MBPQ02000003
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
67901
67976
+
Arg
CCG
[ENA]
¡û
>W1711391232
MELG01000037
Gammaproteobacteria
Acinetobacter sp. GWC1_38_13 [MELG]
237
162
-
Arg
CCG
[ENA]
¡û
>W1712084297
NHRK01000069
Gammaproteobacteria
Acinetobacter junii [NHRK]
7219
7294
+
Arg
CCG
[ENA]
¡û
>C171088664
CP019041
Gammaproteobacteria
Acinetobacter junii 65 [CP019041]
2266522
2266597
+
Arg
CCG
-
¡û
>W131042181
AMJF01000029
Gammaproteobacteria
Acinetobacter junii TG19608 [AMJF]
15027
15102
+
Arg
CCG
[ENA]
¡û
>W131114197
APPB01000043
Gammaproteobacteria
Acinetobacter sp. CIP 102529 [APPB]
22715
22790
+
Arg
CCG
[ENA]
¡û
>W131115365
APPS01000070
Gammaproteobacteria
Acinetobacter junii CIP 107470 [APPS]
6009
6084
+
Arg
CCG
[ENA]
¡û
>W131115620
APPW01000006
Gammaproteobacteria
Acinetobacter junii NIPH 182 [APPW]
777495
777420
-
Arg
CCG
[ENA]
¡û
>W131115689
APPX01000015
Gammaproteobacteria
Acinetobacter junii CIP 64.5 [APPX]
141262
141337
+
Arg
CCG
[ENA]
¡û
>W131115893
APQA01000012
Gammaproteobacteria
Acinetobacter ursingii DSM 16037 = CIP 107286 [APQA]
191643
191568
-
Arg
CCG
[ENA]
¡û
>W131115988
APQB01000020
Gammaproteobacteria
Acinetobacter ursingii NIPH 706 [APQB]
49098
49173
+
Arg
CCG
[ENA]
¡û
>W131116065
APQC01000017
Gammaproteobacteria
Acinetobacter ursingii ANC 3649 [APQC]
135356
135281
-
Arg
CCG
[ENA]
¡û
>W131203502
ASYZ01000122
Gammaproteobacteria
Acinetobacter junii MTCC 11364 [ASYZ]
3753
3828
+
Arg
CCG
[ENA]
¡û
>WENV180006412
FLRY01038505
[FLRY] metagenome; saliva
318
243
-
Arg
CCG
[ENA]
¢þ
>WENV181223382
OFDC01010250
[OFDC] hot springs metagenome; Water
1882
1807
-
Arg
CCG
[ENA]
¢þ
>WENV181731085
OGQD01000015
[OGQD] human gut metagenome; faeces
136595
136520
-
Arg
CCG
[ENA]
¢þ
>WENV181839495
OGVO01002255
[OGVO] freshwater metagenome; freshwater
1095
1020
-
Arg
CCG
[ENA]
¢þ
>W141449332
JEZN01000001
Gammaproteobacteria
Acinetobacter sp. 479375 479375 [JEZN]
80974
81049
+
Arg
CCG
[ENA]
¡û
>WENV170729655
LULG01000116
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
9503
9578
+
Arg
CCG
[ENA]
¢þ
>WENV170733023
LULJ01003524
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
2890
2965
+
Arg
CCG
[ENA]
¢þ
>WENV170735302
LULL01000585
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
10915
10990
+
Arg
CCG
[ENA]
¢þ
>WENV170736175
LULM01000027
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
10179
10254
+
Arg
CCG
[ENA]
¢þ
>WENV170738632
LULP01001363
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
2811
2736
-
Arg
CCG
[ENA]
¢þ
>WENV170759468
LUMS01025903
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
531
456
-
Arg
CCG
[ENA]
¢þ
>WENV170761375
LUMV01000115
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
26300
26225
-
Arg
CCG
[ENA]
¢þ
>C181092883
CP024011
Gammaproteobacteria
Acinetobacter sp. LoGeW2-3 [CP024011]
2100092
2100167
+
Arg
CCG
-
¡û
>C181103332
CP024632
Gammaproteobacteria
Acinetobacter junii lzh-X15 [CP024632]
1432578
1432503
-
Arg
CCG
-
¡û
>C181168377
CP028800
Gammaproteobacteria
Acinetobacter junii WCHAJ59 [CP028800]
1380752
1380677
-
Arg
CCG
-
¡û
>C191005582
AP018824
Gammaproteobacteria
Acinetobacter ursingii M3 [AP018824]
3205208
3205133
-
Arg
CCG
-
¡û
>C191087198
CP032279
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 [CP032279]
788841
788766
-
Arg
CCG
-
¡û
>W1911597455
PNHY01000093
Gammaproteobacteria
Acinetobacter ursingii UMB1319 [PNHY]
5988
6063
+
Arg
CCG
[ENA]
¡û
>W1911662524
QFGM01000091
Gammaproteobacteria
Acinetobacter junii RS03 [QFGM]
1952
2027
+
Arg
CCG
[ENA]
¡û
>W1911663260
QFHD01000052
Gammaproteobacteria
Acinetobacter junii RC08 [QFHD]
6085
6010
-
Arg
CCG
[ENA]
¡û
>W1810043787
BHGA01000024
Gammaproteobacteria
Acinetobacter ursingii OCU_Ac4 [BHGA]
139977
139902
-
Arg
CCG
[ENA]
¡û
>W1810100868
PGOZ01000004
Gammaproteobacteria
Acinetobacter pseudolwoffii ANC 5347 [PGOZ]
49376
49301
-
Arg
CCG
[ENA]
¡û
>W1810304604
PTPV01000014
Gammaproteobacteria
Acinetobacter ursingii blaTEM-116 [PTPV]
53809
53734
-
Arg
CCG
[ENA]
¡û
>W1810537563
QDFG01000004
Gammaproteobacteria
Acinetobacter junii SC54 [QDFG]
7144
7219
+
Arg
CCG
[ENA]
¡û
>W1810537621
QDFH01000017
Gammaproteobacteria
Acinetobacter junii SC57 [QDFH]
22143
22068
-
Arg
CCG
[ENA]
¡û
>W1810582605
QEWH01000031
Gammaproteobacteria
Acinetobacter junii SC22 [QEWH]
7144
7219
+
Arg
CCG
[ENA]
¡û
>W1810894007
QUWR01000013
Gammaproteobacteria
Acinetobacter sp. SWAC5 [QUWR]
118326
118401
+
Arg
CCG
[ENA]
¡û
>W10102394
ACPM01000039
Gammaproteobacteria
Acinetobacter junii SH205 [ACPM]
407
332
-
Arg
CCG
[ENA]
¡û
>W1510013467
BBOS01000045
Gammaproteobacteria
Acinetobacter junii NBRC 110497 [BBOS]
7096
7171
+
Arg
CCG
[ENA]
¡û
>W1510016327
BBSD01000150
Gammaproteobacteria
Acinetobacter junii KCTC 12416 [BBSD]
3380
3455
+
Arg
CCG
[ENA]
¡û
>W1510016485
BBSG01000061
Gammaproteobacteria
Acinetobacter junii NBRC 109759 [BBSG]
316
241
-
Arg
CCG
[ENA]
¡û
>W1510017961
BBTT01000001
Gammaproteobacteria
Acinetobacter ursingii NBRC 110511 [BBTT]
386353
386278
-
Arg
CCG
[ENA]
¡û
>W1510018388
BBUB01000001
Gammaproteobacteria
Acinetobacter ursingii NBRC 110512 [BBUB]
386353
386278
-
Arg
CCG
[ENA]
¡û
>W1510018469
BBUC01000009
Gammaproteobacteria
Acinetobacter ursingii NBRC 110605 [BBUC]
100021
100096
+
Arg
CCG
[ENA]
¡û
>W11102550
ACPM01000039
Gammaproteobacteria
Acinetobacter junii SH205 [ACPM]
407
332
-
Arg
CCG
[ENA]
¡û
>W1511456721
JVHT01000039
Gammaproteobacteria
Acinetobacter ursingii 421_ABAU [JVHT]
80859
80934
+
Arg
CCG
[ENA]
¡û
>W1511481499
JWJT01000093
Gammaproteobacteria
Acinetobacter junii L20 [JWJT]
212
137
-
Arg
CCG
[ENA]
¡û
>W1610061043
BCMC01000017
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
22154
22229
+
Arg
CCG
[ENA]
¡û
>W121046933
AIEA01000019
Gammaproteobacteria
Acinetobacter ursingii DSM 16037 = CIP 107286 [AIEA]
37365
37290
-
Arg
CCG
[ENA]
¡û
>W1610937408
LUOQ01000043
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S29_B6 [LUOQ]
2811
2736
-
Arg
CCG
[ENA]
¡û
>W1610937472
LUOR01000067
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S32_B1 [LUOR]
10179
10254
+
Arg
CCG
[ENA]
¡û
>W1610937483
LUOS01000127
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S35_B9 [LUOS]
2890
2965
+
Arg
CCG
[ENA]
¡û
>W1610937497
LUOT01000007
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S38_B3 [LUOT]
9503
9578
+
Arg
CCG
[ENA]
¡û
>W1610937580
LUOV01000040
Gammaproteobacteria
Moraxellaceae bacterium REDSEA-S44_B2 [LUOV]
26300
26225
-
Arg
CCG
[ENA]
¡û
>W1611065576
MBPQ01002808
Gammaproteobacteria
Acinetobacter sp. WCHAc010034 WCHA34 [MBPQ]
67901
67976
+
Arg
CCG
[ENA]
¡û
>W1710058339
BCMC01000017
Gammaproteobacteria
Acinetobacter ursingii [BCMC]
22154
22229
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK