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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237968 (116 seq.)
>W1710897187
LNHT01000125
Gammaproteobacteria
Proteus mirabilis [LNHT]
115409
115334
-
Lys
CTT
[ENA]
¡û
>W1711005349
LQNN01000003
Gammaproteobacteria
Proteus mirabilis [LQNN]
112540
112465
-
Lys
CTT
[ENA]
¡û
>W1711005400
LQNO01000001
Gammaproteobacteria
Proteus mirabilis [LQNO]
271885
271960
+
Lys
CTT
[ENA]
¡û
>W1711010023
LQQZ01000019
Gammaproteobacteria
Proteus mirabilis [LQQZ]
37794
37869
+
Lys
CTT
[ENA]
¡û
>W1711071347
LSGS01000048
Gammaproteobacteria
Proteus mirabilis [LSGS]
16380
16305
-
Lys
CTT
[ENA]
¡û
>W1711115621
LUAI01000029
Gammaproteobacteria
Proteus sp. HMSC14B05 [LUAI]
36258
36333
+
Lys
CTT
[ENA]
¡û
>W1711120244
LUFT01000032
Gammaproteobacteria
Proteus mirabilis [LUFT]
706976
706901
-
Lys
CTT
[ENA]
¡û
>W1711173624
LWDB01000017
Gammaproteobacteria
Proteus mirabilis [LWDB]
533953
534028
+
Lys
CTT
[ENA]
¡û
>W1711193305
LWUL01000058
Gammaproteobacteria
Proteus mirabilis [LWUL]
68938
69013
+
Lys
CTT
[ENA]
¡û
>W1711193372
LWUM01000068
Gammaproteobacteria
Proteus mirabilis [LWUM]
16278
16203
-
Lys
CTT
[ENA]
¡û
>W1711339021
MBTY01000005
Gammaproteobacteria
Proteus mirabilis [MBTY]
37798
37873
+
Lys
CTT
[ENA]
¡û
>W1711346456
MCOR01000153
Gammaproteobacteria
Proteus mirabilis [MCOR]
1737
1812
+
Lys
CTT
[ENA]
¡û
>W1711684331
MSAA01000002
Gammaproteobacteria
Providencia stuartii [MSAA]
463027
463102
+
Lys
CTT
[ENA]
¡û
>C171103408
CP020052
Gammaproteobacteria
Proteus mirabilis AR_0059 [CP020052]
2908792
2908717
-
Lys
CTT
-
¡û
>C171120911
CP021550
Gammaproteobacteria
Proteus mirabilis AR_0159 [CP021550]
29551
29476
-
Lys
CTT
-
¡û
>C171121719
CP021694
Gammaproteobacteria
Proteus mirabilis AR_0155 [CP021694]
2128568
2128493
-
Lys
CTT
-
¡û
>C171124269
CP021852
Gammaproteobacteria
Proteus mirabilis AR_0156 [CP021852]
321824
321899
+
Lys
CTT
-
¡û
>W131055285
ANBT01000005
Gammaproteobacteria
Proteus mirabilis C05028 [ANBT]
16189
16114
-
Lys
CTT
[ENA]
¡û
>W131098458
AORN01000082
Gammaproteobacteria
Proteus mirabilis PR03 [AORN]
1193
1268
+
Lys
CTT
[ENA]
¡û
>WENV180456273
OBXQ01000644
[OBXQ] human gut metagenome; faeces
11257
11182
-
Lys
CTT
[ENA]
¢þ
>WENV180456588
OBXR01000022
[OBXR] human gut metagenome; faeces
37448
37523
+
Lys
CTT
[ENA]
¢þ
>W141043816
AMGT01000023
Gammaproteobacteria
Proteus mirabilis WGLW6 [AMGT]
37545
37620
+
Lys
CTT
[ENA]
¡û
>W141043889
AMGU01000011
Gammaproteobacteria
Proteus mirabilis WGLW4 [AMGU]
173955
173880
-
Lys
CTT
[ENA]
¡û
>W08006474
ABJD02000101
Gammaproteobacteria
Providencia stuartii ATCC 25827 [ABJD]
511949
512024
+
Lys
CTT
[ENA]
¡û
>WENV182798729
OJTN01000031
[OJTN] human gut metagenome; human gut
12497
12572
+
Lys
CTT
[ENA]
¢þ
>WENV182798835
OJTO01000054
[OJTO] human gut metagenome; human gut
20519
20444
-
Lys
CTT
[ENA]
¢þ
>WENV182809982
OJWU01001418
[OJWU] human gut metagenome; human gut
250
325
+
Lys
CTT
[ENA]
¢þ
>WENV182810147
OJWX01000379
[OJWX] human gut metagenome; human gut
1661
1736
+
Lys
CTT
[ENA]
¢þ
>WENV182856814
OKNQ01000237
[OKNQ] human gut metagenome; human gut
15987
15912
-
Lys
CTT
[ENA]
¢þ
>C08007487
AM942759
Gammaproteobacteria
Proteus mirabilis HI4320 [AM942759]
1725305
1725380
+
Lys
CTT
[Ensembl]
¡û
>WENV182954406
OKWA01000925
[OKWA] human gut metagenome; human gut
280
205
-
Lys
CTT
[ENA]
¢þ
>WENV183772355
PPYF01016769
[PPYF] human gut metagenome; stool from patient with Crohn's disease
11756
11831
+
Lys
CTT
[ENA]
¢þ
>C181023287
CP017082
Gammaproteobacteria
Proteus mirabilis T21 [CP017082]
2908179
2908104
-
Lys
CTT
-
¡û
>C181023364
CP017085
Gammaproteobacteria
Proteus mirabilis T18 [CP017085]
2733740
2733815
+
Lys
CTT
-
¡û
>C181125718
CP026044
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [CP026044]
1315007
1314932
-
Lys
CTT
-
¡û
>C181126069
CP026051
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [CP026051]
766073
766148
+
Lys
CTT
-
¡û
>C181126469
CP026059
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [CP026059]
2174057
2174132
+
Lys
CTT
-
¡û
>C181126594
CP026062
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [CP026062]
1593205
1593130
-
Lys
CTT
-
¡û
>C181134890
CP026571
Gammaproteobacteria
Proteus mirabilis BC11-24 [CP026571]
2283726
2283801
+
Lys
CTT
-
¡û
>C181135059
CP026581
Gammaproteobacteria
Proteus mirabilis [CP026581]
2412864
2412939
+
Lys
CTT
-
¡û
>C181152030
CP027398
Gammaproteobacteria
Providencia stuartii FDAARGOS_291 [CP027398]
2683778
2683705
-
Lys
CTT
-
¡û
>C181174894
CP029133
Gammaproteobacteria
Proteus mirabilis AR379 [CP029133]
1000972
1000897
-
Lys
CTT
-
¡û
>C181184312
CP029725
Gammaproteobacteria
Proteus mirabilis AR_0029 [CP029725]
665344
665269
-
Lys
CTT
-
¡û
>C191118995
CP034090
Gammaproteobacteria
Proteus mirabilis PmSC1111 [CP034090]
940845
940770
-
Lys
CTT
-
¡û
>C191119041
CP034091
Gammaproteobacteria
Proteus mirabilis PmBC1123 [CP034091]
2208165
2208240
+
Lys
CTT
-
¡û
>C191199970
LR134205
Gammaproteobacteria
Proteus mirabilis NCTC4199 [LR134205]
2248305
2248380
+
Lys
CTT
-
¡û
>W09127690
ACLE01000029
Gammaproteobacteria
Proteus mirabilis ATCC 29906 [ACLE]
88524
88599
+
Lys
CTT
[ENA]
¡û
>W141790070
JOVJ01000005
Gammaproteobacteria
Proteus mirabilis [JOVJ]
310061
310136
+
Lys
CTT
[ENA]
¡û
>C141003304
CP004022
Gammaproteobacteria
Proteus mirabilis BB2000 [CP004022]
1849188
1849263
+
Lys
CTT
[Ensembl]
¡û
>W1911137187
NOWA01000004
Gammaproteobacteria
Proteus mirabilis PM187 [NOWA]
177566
177641
+
Lys
CTT
[ENA]
¡û
>W1911137312
NOWB01000031
Gammaproteobacteria
Proteus mirabilis PM185 [NOWB]
37490
37565
+
Lys
CTT
[ENA]
¡û
>W1911429358
NXKC01000002
Gammaproteobacteria
Proteus mirabilis PM005 [NXKC]
177745
177670
-
Lys
CTT
[ENA]
¡û
>W1911770140
QXIN01000002
Gammaproteobacteria
Proteus mirabilis PMWJ [QXIN]
239579
239504
-
Lys
CTT
[ENA]
¡û
>W1810006277
BFCK01000504
Gammaproteobacteria
Proteus mirabilis MH13-009N [BFCK]
1963
2038
+
Lys
CTT
[ENA]
¡û
>W1810014447
BGMB01000031
Gammaproteobacteria
Proteus mirabilis TUM4660 [BGMB]
42029
41954
-
Lys
CTT
[ENA]
¡û
>W1810188972
PKIT01000001
Gammaproteobacteria
Proteus mirabilis UMB0315 [PKIT]
1291565
1291640
+
Lys
CTT
[ENA]
¡û
>W1810295173
PTIJ01000040
Gammaproteobacteria
Proteus mirabilis 2150/3191 [PTIJ]
197070
197145
+
Lys
CTT
[ENA]
¡û
>W1810335214
PURY01000007
Gammaproteobacteria
Proteus mirabilis GER_MD10_1505_Pmi_049 [PURY]
37009
37084
+
Lys
CTT
[ENA]
¡û
>W1810340578
PUXR01000018
Gammaproteobacteria
Proteus mirabilis PmPHI [PUXR]
59562
59487
-
Lys
CTT
[ENA]
¡û
>W1810534958
QDAK01000002
Gammaproteobacteria
Proteus mirabilis AR_0377 [QDAK]
539966
539891
-
Lys
CTT
[ENA]
¡û
>W1810595587
QGGA01000009
Gammaproteobacteria
Proteus mirabilis LBUEL-H11 [QGGA]
37889
37964
+
Lys
CTT
[ENA]
¡û
>W1810626538
QHLF01000001
Gammaproteobacteria
Proteus mirabilis 11985-2-3 [QHLF]
69385
69460
+
Lys
CTT
[ENA]
¡û
>C151096966
CP012674
Gammaproteobacteria
Proteus mirabilis CYPM1 [CP012674]
2196326
2196401
+
Lys
CTT
-
¡û
>C151097047
CP012675
Gammaproteobacteria
Proteus mirabilis CYPV1 [CP012675]
2198970
2199045
+
Lys
CTT
-
¡û
>W1511362226
JSCB01000051
Gammaproteobacteria
Proteus mirabilis Pm-Oxa48 [JSCB]
6421
6496
+
Lys
CTT
[ENA]
¡û
>W1511393957
JTAW01000004
Gammaproteobacteria
Proteus mirabilis FDAARGOS_85 [JTAW]
705025
705100
+
Lys
CTT
[ENA]
¡û
>W1511394312
JTBA01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_81 [JTBA]
1593196
1593121
-
Lys
CTT
[ENA]
¡û
>W1511394354
JTBB01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_80 [JTBB]
2173924
2173999
+
Lys
CTT
[ENA]
¡û
>W1511395676
JTBP01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_67 [JTBP]
766059
766134
+
Lys
CTT
[ENA]
¡û
>W1511396326
JTBW01000001
Gammaproteobacteria
Proteus mirabilis FDAARGOS_60 [JTBW]
1314979
1314904
-
Lys
CTT
[ENA]
¡û
>W1511446679
JUXK01000063
Gammaproteobacteria
Proteus mirabilis 68_PMIR [JUXK]
36960
37035
+
Lys
CTT
[ENA]
¡û
>W1511446846
JUXR01000306
Gammaproteobacteria
Proteus mirabilis 672_PMIR [JUXR]
6948
6873
-
Lys
CTT
[ENA]
¡û
>W1511447556
JUYT01000025
Gammaproteobacteria
Proteus mirabilis 646_PMIR [JUYT]
92
17
-
Lys
CTT
[ENA]
¡û
>W1511452526
JVEH01000027
Gammaproteobacteria
Proteus mirabilis 51_PMIR [JVEH]
16475
16400
-
Lys
CTT
[ENA]
¡û
>W1511454135
JVFU01000063
Gammaproteobacteria
Proteus mirabilis 47_PMIR [JVFU]
37077
37152
+
Lys
CTT
[ENA]
¡û
>W1511456114
JVHI01000029
Gammaproteobacteria
Proteus mirabilis 430_PMIR [JVHI]
111613
111688
+
Lys
CTT
[ENA]
¡û
>W1511456224
JVHK01000027
Gammaproteobacteria
Proteus mirabilis 429_PMIR [JVHK]
172999
173074
+
Lys
CTT
[ENA]
¡û
>W1511456921
JVHX01000040
Gammaproteobacteria
Proteus mirabilis 418_PMIR [JVHX]
117710
117635
-
Lys
CTT
[ENA]
¡û
>W1511458682
JVJQ01000073
Gammaproteobacteria
Proteus mirabilis 373_PMIR [JVJQ]
8356
8281
-
Lys
CTT
[ENA]
¡û
>W1511459181
JVKD01000039
Gammaproteobacteria
Proteus mirabilis 360_PMIR [JVKD]
37347
37422
+
Lys
CTT
[ENA]
¡û
>W1511461597
JVMQ01000125
Gammaproteobacteria
Proteus mirabilis 292_PMIR [JVMQ]
9751
9676
-
Lys
CTT
[ENA]
¡û
>W1511463233
JVOK01000103
Gammaproteobacteria
Proteus mirabilis 25_PMIR [JVOK]
8340
8265
-
Lys
CTT
[ENA]
¡û
>W1511463695
JVPB01000010
Gammaproteobacteria
Proteus mirabilis 232_PMIR [JVPB]
67797
67872
+
Lys
CTT
[ENA]
¡û
>W1511467756
JVTJ01000017
Gammaproteobacteria
Proteus mirabilis 1330_PMIR [JVTJ]
68889
68964
+
Lys
CTT
[ENA]
¡û
>W1511467955
JVTO01000014
Gammaproteobacteria
Proteus mirabilis 1326_PMIR [JVTO]
6136
6061
-
Lys
CTT
[ENA]
¡û
>W1511468416
JVUE01000098
Gammaproteobacteria
Proteus mirabilis 1313_PMIR [JVUE]
40786
40711
-
Lys
CTT
[ENA]
¡û
>W1511468475
JVUH01000678
Gammaproteobacteria
Proteus mirabilis 1310_PMIR [JVUH]
468
543
+
Lys
CTT
[ENA]
¡û
>W1511469286
JVVD01000133
Gammaproteobacteria
Proteus mirabilis 1293_PMIR [JVVD]
40671
40596
-
Lys
CTT
[ENA]
¡û
>W1511470136
JVWE01000073
Gammaproteobacteria
Proteus mirabilis 127_PMIR [JVWE]
37074
37149
+
Lys
CTT
[ENA]
¡û
>W1511471318
JVXV01000064
Gammaproteobacteria
Proteus mirabilis 1230_SSON [JVXV]
121715
121790
+
Lys
CTT
[ENA]
¡û
>W1511473562
JWAP01000091
Gammaproteobacteria
Proteus mirabilis 1166_PMIR [JWAP]
37380
37455
+
Lys
CTT
[ENA]
¡û
>W1511474104
JWBG01000062
Gammaproteobacteria
Proteus mirabilis 1150_PMIR [JWBG]
16467
16392
-
Lys
CTT
[ENA]
¡û
>W1511474567
JWBY01000047
Gammaproteobacteria
Proteus mirabilis 1134_PMIR [JWBY]
78910
78985
+
Lys
CTT
[ENA]
¡û
>W1511475110
JWCS01000122
Gammaproteobacteria
Proteus mirabilis 1114_PMIR [JWCS]
68910
68985
+
Lys
CTT
[ENA]
¡û
>W1511574027
LANL01000005
Gammaproteobacteria
Proteus mirabilis 25933 GTA [LANL]
11597
11672
+
Lys
CTT
[ENA]
¡û
>W1511633368
LDIU01000776
Gammaproteobacteria
Proteus mirabilis SAS71 [LDIU]
532
457
-
Lys
CTT
[ENA]
¡û
>C121013410
CP003488
Gammaproteobacteria
Providencia stuartii MRSN 2154 [CP003488]
3772764
3772839
+
Lys
CTT
[Ensembl]
¡û
>C161086422
CP015347
Gammaproteobacteria
Proteus mirabilis AOUC-001 [CP015347]
1595313
1595238
-
Lys
CTT
-
¡û
>W1610540625
JSUO01000182
Gammaproteobacteria
Proteus mirabilis [JSUO]
1756
1831
+
Lys
CTT
[ENA]
¡û
>W1610540649
JSUP01000047
Gammaproteobacteria
Proteus mirabilis [JSUP]
6528
6603
+
Lys
CTT
[ENA]
¡û
>W1610575863
LAGU01000009
Gammaproteobacteria
Proteus mirabilis [LAGU]
40589
40514
-
Lys
CTT
[ENA]
¡û
>W1610610357
LGAY01000025
Gammaproteobacteria
Proteus mirabilis [LGAY]
60479
60404
-
Lys
CTT
[ENA]
¡û
>W1610757591
LNHT01000125
Gammaproteobacteria
Proteus mirabilis [LNHT]
115409
115334
-
Lys
CTT
[ENA]
¡û
>W1610855999
LQNN01000003
Gammaproteobacteria
Proteus mirabilis [LQNN]
112540
112465
-
Lys
CTT
[ENA]
¡û
>W1610856050
LQNO01000001
Gammaproteobacteria
Proteus mirabilis [LQNO]
271885
271960
+
Lys
CTT
[ENA]
¡û
>W1610858543
LQQZ01000019
Gammaproteobacteria
Proteus mirabilis [LQQZ]
37794
37869
+
Lys
CTT
[ENA]
¡û
>W1610910607
LSGS01000048
Gammaproteobacteria
Proteus mirabilis [LSGS]
16380
16305
-
Lys
CTT
[ENA]
¡û
>W1610982229
LWDB01000017
Gammaproteobacteria
Proteus mirabilis [LWDB]
533953
534028
+
Lys
CTT
[ENA]
¡û
>W1610994020
LWUL01000058
Gammaproteobacteria
Proteus mirabilis [LWUL]
68938
69013
+
Lys
CTT
[ENA]
¡û
>W1610994087
LWUM01000068
Gammaproteobacteria
Proteus mirabilis [LWUM]
16278
16203
-
Lys
CTT
[ENA]
¡û
>W1710513255
FNAA01000001
Gammaproteobacteria
Proteus mirabilis [FNAA]
635610
635685
+
Lys
CTT
[ENA]
¡û
>W1710563227
FOPN01000006
Gammaproteobacteria
Proteus mirabilis [FOPN]
174679
174604
-
Lys
CTT
[ENA]
¡û
>W1710643646
JSUO01000182
Gammaproteobacteria
Proteus mirabilis [JSUO]
1756
1831
+
Lys
CTT
[ENA]
¡û
>W1710643670
JSUP01000047
Gammaproteobacteria
Proteus mirabilis [JSUP]
6528
6603
+
Lys
CTT
[ENA]
¡û
>W1710694127
LAGU01000009
Gammaproteobacteria
Proteus mirabilis [LAGU]
40589
40514
-
Lys
CTT
[ENA]
¡û
>W1710731863
LGAY01000025
Gammaproteobacteria
Proteus mirabilis [LGAY]
60479
60404
-
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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