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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238017 (67 seq.)
>W1710809588
LKEQ01000005
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
23701
23774
+
Phe
GAA
[ENA]
¡û
>W1711055039
LRUH01000009
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
5516
5589
+
Phe
GAA
[ENA]
¡û
>W1711088447
LSYX01000096
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
4226
4153
-
Phe
GAA
[ENA]
¡û
>W1711088482
LSYY01000122
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
2633
2560
-
Phe
GAA
[ENA]
¡û
>W1711258820
LYUV01000020
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
1554
1481
-
Phe
GAA
[ENA]
¡û
>W1711258854
LYUW01000021
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
1554
1481
-
Phe
GAA
[ENA]
¡û
>W1711258887
LYUX01000019
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
1641
1568
-
Phe
GAA
[ENA]
¡û
>W1711258924
LYUY01000033
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
11056
11129
+
Phe
GAA
[ENA]
¡û
>W1711745702
MUJL01000035
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
1219
1144
-
Phe
GAA
[ENA]
¡û
>W1711745727
MUJM01000021
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
1212
1137
-
Phe
GAA
[ENA]
¡û
>W1712108428
NJBR01000028
Alphaproteobacteria
Wolbachia endosymbiont of Wuchereria bancrofti [NJBR]
19317
19244
-
Phe
GAA
[ENA]
¡û
>W131052803
AMZJ01000002
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
12404
12331
-
Phe
GAA
[ENA]
¡û
>W131242628
CAOH01000013
Alphaproteobacteria
Wolbachia pipientis wBol1-b [CAOH]
5433
5506
+
Phe
GAA
[ENA]
¡û
>W131243105
CAOU02000011
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
50049
49974
-
Phe
GAA
[ENA]
¡û
>C026850
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
513807
513732
-
Phe
GAA
[Ensembl]
¡û
>C026866
AE017321
Alphaproteobacteria
Wolbachia endosymbiont strain TRS of Brugia malayi [AE017321]
1069805
1069733
-
Phe
GAA
[Ensembl]
¡û
>w016797
AAQP01000044
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
2329
2406
+
Phe
GAA
[ENA]
¡û
>w005431
AAGC01000285
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans [AAGC]
1005
928
-
Phe
GAA
[ENA]
¡û
>W141065625
AQQE01000030
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
8685
8760
+
Phe
GAA
[ENA]
¡û
>WENV181405259
OGCC01003716
[OGCC] insect metagenome; haemolymph
678
751
+
Phe
GAA
[ENA]
¢þ
>WENV181405279
OGCD01000014
[OGCD] insect metagenome; haemolymph
787
714
-
Phe
GAA
[ENA]
¢þ
>WENV181406117
OGCF01002254
[OGCF] insect metagenome; haemolymph
1275
1202
-
Phe
GAA
[ENA]
¢þ
>W141240218
CAGB01000093
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
5108
5035
-
Phe
GAA
[ENA]
¡û
>C08011427
AM999887
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus Pel wPip [AM999887]
52909
52836
-
Phe
GAA
[Ensembl]
¡û
>C181017560
CP015510
Alphaproteobacteria
Wolbachia endosymbiont of Folsomia candida Berlin [CP015510]
1397382
1397456
+
Phe
GAA
-
¡û
>C191074342
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
753052
752979
-
Phe
GAA
-
¡û
>C191123114
CP034333
Alphaproteobacteria
Wolbachia endosymbiont of Brugia malayi [CP034333]
402327
402254
-
Phe
GAA
-
¡û
>C191123138
CP034334
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034334]
691435
691508
+
Phe
GAA
-
¡û
>C191123172
CP034335
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila mauritiana wMau [CP034335]
691436
691509
+
Phe
GAA
-
¡û
>C191188719
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
1140823
1140897
+
Phe
GAA
-
¡û
>W09113859
ABZA01000002
Alphaproteobacteria
Wolbachia endosymbiont of Culex quinquefasciatus of Culex quinquefasciatus JHB [ABZA]
383197
383124
-
Phe
GAA
[ENA]
¡û
>W09121807
ACFP01000121
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
212
137
-
Phe
GAA
[ENA]
¡û
>W141812272
JQAM01000015
Alphaproteobacteria
Wolbachia pipientis [JQAM]
33769
33694
-
Phe
GAA
[ENA]
¡û
>W1910213455
FMKF01000008
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
16708
16781
+
Phe
GAA
[ENA]
¡û
>W1910753974
MKIF01000165
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
8211
8285
+
Phe
GAA
[ENA]
¡û
>W1910759029
MLZJ01000084
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
1255
1181
-
Phe
GAA
[ENA]
¡û
>W1910760274
MNCG01000082
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
8224
8298
+
Phe
GAA
[ENA]
¡û
>C09111283
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
366306
366231
-
Phe
GAA
[Ensembl]
¡û
>W1910794374
MRWX01000054
Alphaproteobacteria
Wolbachia pipientis wAus [MRWX]
5499
5572
+
Phe
GAA
[ENA]
¡û
>W1910802349
MSYL01000099
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
1305
1231
-
Phe
GAA
[ENA]
¡û
>W1911239450
NSDR01000041
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
8216
8290
+
Phe
GAA
[ENA]
¡û
>W1911239499
NSDS01000072
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
1795
1721
-
Phe
GAA
[ENA]
¡û
>W1911239535
NSDT01000094
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
8216
8290
+
Phe
GAA
[ENA]
¡û
>W1911281101
NTHL01000034
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
8688
8762
+
Phe
GAA
[ENA]
¡û
>W1911412158
NWVH01000057
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
6008
6081
+
Phe
GAA
[ENA]
¡û
>W1911412191
NWVI01000053
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
6076
6149
+
Phe
GAA
[ENA]
¡û
>W1911412248
NWVJ01000082
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVJ]
9193
9266
+
Phe
GAA
[ENA]
¡û
>W1810758348
QPIP01000048
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
3896
3823
-
Phe
GAA
[ENA]
¡û
>C151001140
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
934950
934877
-
Phe
GAA
[Ensembl]
¡û
>C151101106
HG810405
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca volvulus str. Cameroon [HG810405]
536269
536196
-
Phe
GAA
-
¡û
>C151102228
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
530562
530487
-
Phe
GAA
[Ensembl]
¡û
>W1510562595
CTEH01000001
Alphaproteobacteria
Wolbachia endosymbiont of Culex molestus wPip_Mol of Culex molestus [CTEH]
468858
468785
-
Phe
GAA
[ENA]
¡û
>W1511183988
JMCJ01001026
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus of Dactylopius coccus wCoc1 [JMCJ]
1123
1050
-
Phe
GAA
[ENA]
¡û
>W1511536235
JYPC01000105
Alphaproteobacteria
Wolbachia endosymbiont of Operophtera brumata of Operophtera brumata Ob_Wba [JYPC]
2232
2159
-
Phe
GAA
[ENA]
¡û
>W11145930
AERW01000016
Alphaproteobacteria
Wolbachia endosymbiont of Nasonia vitripennis wVitB of Nasonia vitripennis [AERW]
2997
2924
-
Phe
GAA
[ENA]
¡û
>W11185726
CACK01000070
Alphaproteobacteria
Wolbachia endosymbiont of Culex pipiens molestus [CACK]
1134
1061
-
Phe
GAA
[ENA]
¡û
>C131009105
CP003883
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wNo [CP003883]
108676
108749
+
Phe
GAA
[Ensembl]
¡û
>C131009169
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
507064
506989
-
Phe
GAA
[Ensembl]
¡û
>C131019577
HE660029
Alphaproteobacteria
Wolbachia endosymbiont of Onchocerca ochengi wOo [HE660029]
898327
898254
-
Phe
GAA
[Ensembl]
¡û
>W1610673694
LKEQ01000005
Alphaproteobacteria
Wolbachia endosymbiont of Trichogramma pretiosum [LKEQ]
23701
23774
+
Phe
GAA
[ENA]
¡û
>W1610896085
LRUH01000009
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
5516
5589
+
Phe
GAA
[ENA]
¡û
>W1610922986
LSYX01000096
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYX]
4226
4153
-
Phe
GAA
[ENA]
¡û
>W1610923021
LSYY01000122
Alphaproteobacteria
Wolbachia endosymbiont of Dactylopius coccus [LSYY]
2633
2560
-
Phe
GAA
[ENA]
¡û
>W1611021085
LYUV01000020
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
1554
1481
-
Phe
GAA
[ENA]
¡û
>W1611021119
LYUW01000021
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
1554
1481
-
Phe
GAA
[ENA]
¡û
>W1611021152
LYUX01000019
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
1641
1568
-
Phe
GAA
[ENA]
¡û
>W1611021189
LYUY01000033
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
11056
11129
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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