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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238022 (43 seq.)
>W1711055057
LRUH01000042
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
24592
24519
-
Thr
GGT
[ENA]
¡û
>W1711258833
LYUV01000075
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
3074
3147
+
Thr
GGT
[ENA]
¡û
>W1711258867
LYUW01000075
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
3117
3190
+
Thr
GGT
[ENA]
¡û
>W1711258902
LYUX01000078
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
3074
3147
+
Thr
GGT
[ENA]
¡û
>W1711258933
LYUY01000065
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
5208
5281
+
Thr
GGT
[ENA]
¡û
>W1711466313
MJMG01000001
Alphaproteobacteria
Wolbachia pipientis [MJMG]
552
479
-
Thr
GGT
[ENA]
¡û
>W1711745718
MUJL01000111
Alphaproteobacteria
Wolbachia pipientis wUni [MUJL]
1806
1733
-
Thr
GGT
[ENA]
¡û
>W1711745737
MUJM01000057
Alphaproteobacteria
Wolbachia pipientis wVitA [MUJM]
1801
1728
-
Thr
GGT
[ENA]
¡û
>W131052817
AMZJ01000058
Alphaproteobacteria
Wolbachia endosymbiont of Diaphorina citri [AMZJ]
2318
2391
+
Thr
GGT
[ENA]
¡û
>W131243122
CAOU02000037
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila suzukii str. valsugana of Drosophila suzukii [CAOU]
4055
3982
-
Thr
GGT
[ENA]
¡û
>C026842
AE017196
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila melanogaster wMel [AE017196]
1105631
1105559
-
Thr
GGT
[Ensembl]
¡û
>w016800
AAQP01000079
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila willistoni of Drosophila willistoni TSC#14030-0811.24 [AAQP]
1600
1523
-
Thr
GGT
[ENA]
¡û
>w005421
AAGC01000065
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans [AAGC]
1653
1576
-
Thr
GGT
[ENA]
¡û
>w005398
AAGB01000016
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae [AAGB]
4228
4305
+
Thr
GGT
[ENA]
¡û
>W141065610
AQQE01000002
Alphaproteobacteria
Wolbachia pipientis wMelPop [AQQE]
2601
2528
-
Thr
GGT
[ENA]
¡û
>WENV181405256
OGCC01002001
[OGCC] insect metagenome; haemolymph
775
848
+
Thr
GGT
[ENA]
¢þ
>WENV181405329
OGCD01001196
[OGCD] insect metagenome; haemolymph
474
401
-
Thr
GGT
[ENA]
¢þ
>W141240223
CAGB01000114
Alphaproteobacteria
Wolbachia pipientis wAlbB [CAGB]
454
380
-
Thr
GGT
[ENA]
¡û
>W09121806
ACFP01000071
Alphaproteobacteria
Wolbachia endosymbiont of Muscidifurax uniraptor [ACFP]
599
672
+
Thr
GGT
[ENA]
¡û
>C191074331
CP031221
Alphaproteobacteria
Wolbachia pipientis wAlbB [CP031221]
1421152
1421226
+
Thr
GGT
-
¡û
>C191188710
CP041215
Alphaproteobacteria
Wolbachia endosymbiont of Carposina sasakii [CP041215]
75268
75341
+
Thr
GGT
-
¡û
>W141812297
JQAM01000036
Alphaproteobacteria
Wolbachia pipientis [JQAM]
15451
15378
-
Thr
GGT
[ENA]
¡û
>W1910213474
FMKF01000136
Alphaproteobacteria
Wolbachia endosymbiont of Bemisia tabaci [FMKF]
437
364
-
Thr
GGT
[ENA]
¡û
>W1910753965
MKIF01000089
Alphaproteobacteria
Wolbachia sp. wRi [MKIF]
2673
2600
-
Thr
GGT
[ENA]
¡û
>W1910759046
MLZJ01000164
Alphaproteobacteria
Wolbachia sp. wMel_KL [MLZJ]
2651
2578
-
Thr
GGT
[ENA]
¡û
>W1910760293
MNCG01000165
Alphaproteobacteria
Wolbachia sp. wMel_AMD [MNCG]
9421
9494
+
Thr
GGT
[ENA]
¡û
>W1910802368
MSYL01000277
Alphaproteobacteria
Wolbachia sp. wRi_2 [MSYL]
5771
5844
+
Thr
GGT
[ENA]
¡û
>C09111273
CP001391
Alphaproteobacteria
Wolbachia sp. wRi [CP001391]
1222071
1221998
-
Thr
GGT
[Ensembl]
¡û
>W1911239461
NSDR01000078
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_India [NSDR]
9577
9650
+
Thr
GGT
[ENA]
¡û
>W1911239481
NSDS01000013
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Hawaii [NSDS]
9389
9462
+
Thr
GGT
[ENA]
¡û
>W1911239545
NSDT01000119
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila ananassae of Drosophila ananassae wAna_Indonesia [NSDT]
9577
9650
+
Thr
GGT
[ENA]
¡û
>W1911281122
NTHL01000080
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila subpulchrella of Drosophila subpulchrella wSpc [NTHL]
3938
3865
-
Thr
GGT
[ENA]
¡û
>W1911412165
NWVH01000090
Alphaproteobacteria
Wolbachia pipientis FL2016 [NWVH]
463
389
-
Thr
GGT
[ENA]
¡û
>W1911412208
NWVI01000142
Alphaproteobacteria
Wolbachia pipientis HN2016 [NWVI]
590
516
-
Thr
GGT
[ENA]
¡û
>W1810758346
QPIP01000029
Alphaproteobacteria
Wolbachia endosymbiont of Cylisticus convexus of Cylisticus convexus Wcon [QPIP]
9307
9380
+
Thr
GGT
[ENA]
¡û
>C151001149
AP013028
Alphaproteobacteria
Wolbachia endosymbiont of Cimex lectularius wCle [AP013028]
384535
384462
-
Thr
GGT
[Ensembl]
¡û
>C151102218
LK055284
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wAu [LK055284]
1105409
1105336
-
Thr
GGT
[Ensembl]
¡û
>C131009158
CP003884
Alphaproteobacteria
Wolbachia endosymbiont of Drosophila simulans wHa [CP003884]
1132993
1132920
-
Thr
GGT
[Ensembl]
¡û
>W1610896103
LRUH01000042
Alphaproteobacteria
Wolbachia endosymbiont of Laodelphax striatellus of Laodelphax striatella [LRUH]
24592
24519
-
Thr
GGT
[ENA]
¡û
>W1611021098
LYUV01000075
Alphaproteobacteria
Wolbachia endosymbiont of Nomada leucophthalma [LYUV]
3074
3147
+
Thr
GGT
[ENA]
¡û
>W1611021132
LYUW01000075
Alphaproteobacteria
Wolbachia endosymbiont of Nomada flava [LYUW]
3117
3190
+
Thr
GGT
[ENA]
¡û
>W1611021167
LYUX01000078
Alphaproteobacteria
Wolbachia endosymbiont of Nomada panzeri [LYUX]
3074
3147
+
Thr
GGT
[ENA]
¡û
>W1611021198
LYUY01000065
Alphaproteobacteria
Wolbachia endosymbiont of Nomada ferruginata [LYUY]
5208
5281
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK