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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238071 (104 seq.)
>A171000016
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1585878
1585951
+
His
GTG
-
¡û
>A171000453
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
1817469
1817396
-
His
GTG
-
¡û
>A171004429
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
147590
147516
-
His
GTG
-
¡û
>A171006187
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
147591
147517
-
His
GTG
-
¡û
>WENV180273627
OBEU01001799
[OBEU] marine metagenome; marine
841
915
+
His
GTG
[ENA]
¢þ
>WENV180318432
OBKM01000834
[OBKM] metagenome; water
5132
5059
-
His
GTG
[ENA]
¢þ
>WENV180318828
OBKM01015099
[OBKM] metagenome; water
846
773
-
His
GTG
[ENA]
¢þ
>WENV170008787
APHM01005912
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1236
1309
+
His
GTG
[ENA]
¢þ
>WENV170008796
APHM01006380
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
883
810
-
His
GTG
[ENA]
¢þ
>WENV170008885
APHM01012944
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1324
1251
-
His
GTG
[ENA]
¢þ
>WENV170008919
APHM01015587
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
3620
3693
+
His
GTG
[ENA]
¢þ
>WENV170009085
APHM01021224
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
1550
1623
+
His
GTG
[ENA]
¢þ
>At0811
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1596638
1596710
+
His
GTG
[Ensembl]
¡û
>WENV170679559
LFCJ01000024
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
49279
49352
+
His
GTG
[ENA]
¢þ
>WENV170680052
LFCJ01003085
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
3321
3248
-
His
GTG
[ENA]
¢þ
>WENV170680070
LFCJ01003465
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
10600
10527
-
His
GTG
[ENA]
¢þ
>WENV170681126
LFFM01000091
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
46462
46389
-
His
GTG
[ENA]
¢þ
>WENV170681178
LFFM01000172
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
20065
20138
+
His
GTG
[ENA]
¢þ
>WENV170681223
LFFM01000220
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
5997
6070
+
His
GTG
[ENA]
¢þ
>WENV170681266
LFFM01000334
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
18873
18800
-
His
GTG
[ENA]
¢þ
>WENV170681996
LFFM01004690
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
111
39
-
His
GTG
[ENA]
¢þ
>WENV170701997
LKMJ01000236
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
32761
32835
+
His
GTG
[ENA]
¢þ
>WENV170702542
LKMJ01002472
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9192
9117
-
His
GTG
[ENA]
¢þ
>WENV170703410
LKMJ01011164
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
8233
8158
-
His
GTG
[ENA]
¢þ
>W1910006689
BBJO01000003
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
130348
130275
-
His
GTG
[ENA]
¡û
>W1910006747
BBJP01000013
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
90078
90005
-
His
GTG
[ENA]
¡û
>W1910226775
FNBO01000004
Euryarchaeota
Halorubrum xinjiangense CGMCC 1.3527 [FNBO]
49393
49320
-
His
GTG
[ENA]
¡û
>W1910227043
FNIA01000006
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
6086
6160
+
His
GTG
[ENA]
¡û
>W1910228437
FNPB01000005
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
51995
51922
-
His
GTG
[ENA]
¡û
>W1910228594
FNVN01000001
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
975568
975495
-
His
GTG
[ENA]
¡û
>W1910229590
FNYR01000026
Euryarchaeota
Halohasta litchfieldiae DSM 22187 [FNYR]
3167
3094
-
His
GTG
[ENA]
¡û
>W1910229754
FODV01000003
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
225076
225003
-
His
GTG
[ENA]
¡û
>W1910230030
FOJA01000001
Euryarchaeota
Halobacterium jilantaiense CGMCC 1.5337 [FOJA]
1996663
1996590
-
His
GTG
[ENA]
¡û
>W1910230356
FOOQ01000001
Euryarchaeota
Halopelagius inordinatus CGMCC 1.7739 [FOOQ]
237254
237181
-
His
GTG
[ENA]
¡û
>W1910230408
FOPZ01000014
Euryarchaeota
Halorubrum aquaticum CGMCC 1.6377 [FOPZ]
32296
32369
+
His
GTG
[ENA]
¡û
>W1910230672
FOYN01000004
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
91356
91429
+
His
GTG
[ENA]
¡û
>W1910546972
FZNK01000004
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
200952
201025
+
His
GTG
[ENA]
¡û
>W1910572767
JNFH02000065
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
5995
6068
+
His
GTG
[ENA]
¡û
>W1910574995
JQKV01000001
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
40663
40590
-
His
GTG
[ENA]
¡û
>W1910749508
MJCD01000014
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
30598
30671
+
His
GTG
[ENA]
¡û
>W1910752239
MKFG01000002
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
333002
333075
+
His
GTG
[ENA]
¡û
>W1910873650
NDWV01000008
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
115379
115452
+
His
GTG
[ENA]
¡û
>W1910880421
NEDJ01000003
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
115977
116050
+
His
GTG
[ENA]
¡û
>W1910891355
NEWI01000114
Euryarchaeota
Halorubrum sp. SD612 [NEWI]
7230
7303
+
His
GTG
[ENA]
¡û
>W1910891394
NEWJ01000013
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
36200
36273
+
His
GTG
[ENA]
¡û
>W1910911713
NHNZ01000174
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
25592
25519
-
His
GTG
[ENA]
¡û
>W1910911745
NHOA01000084
Euryarchaeota
Halorubrum persicum C49 [NHOA]
3865
3792
-
His
GTG
[ENA]
¡û
>W1910911967
NHOV01000836
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
32478
32405
-
His
GTG
[ENA]
¡û
>W1910912025
NHOW01000163
Euryarchaeota
Halorubrum ezzemoulense LD3 [NHOW]
18724
18651
-
His
GTG
[ENA]
¡û
>W1910912060
NHOX01000044
Euryarchaeota
Halorubrum sp. Ib24 [NHOX]
95832
95905
+
His
GTG
[ENA]
¡û
>W1910912069
NHOY01000026
Euryarchaeota
Halorubrum sp. Hd13 [NHOY]
2151
2224
+
His
GTG
[ENA]
¡û
>W1910912145
NHOZ01000152
Euryarchaeota
Halorubrum ezzemoulense Ga36 [NHOZ]
60758
60831
+
His
GTG
[ENA]
¡û
>W1910912167
NHPA01000056
Euryarchaeota
Halorubrum ezzemoulense Ga2p [NHPA]
32907
32834
-
His
GTG
[ENA]
¡û
>W1910912195
NHPB01000006
Euryarchaeota
Halorubrum ezzemoulense G37 [NHPB]
32564
32491
-
His
GTG
[ENA]
¡û
>W1910912241
NHPC01000016
Euryarchaeota
Halorubrum ezzemoulense Fb21 [NHPC]
18725
18652
-
His
GTG
[ENA]
¡û
>W1910912257
NHPD01000008
Euryarchaeota
Halorubrum ezzemoulense Ec15 [NHPD]
10088
10161
+
His
GTG
[ENA]
¡û
>W1910912299
NHPE01000014
Euryarchaeota
Halorubrum sp. Eb13 [NHPE]
19481
19408
-
His
GTG
[ENA]
¡û
>W1910912343
NHPF01000026
Euryarchaeota
Halorubrum sp. Ea8 [NHPF]
53648
53575
-
His
GTG
[ENA]
¡û
>W1910912386
NHPG01000008
Euryarchaeota
Halorubrum sp. Ea1 [NHPG]
25673
25600
-
His
GTG
[ENA]
¡û
>W1910912479
NHPI01002367
Euryarchaeota
Halorubrum sp. E3 [NHPI]
82
9
-
His
GTG
[ENA]
¡û
>W1910912517
NHPJ01000096
Euryarchaeota
Halorubrum halodurans Cb34 [NHPJ]
2367
2294
-
His
GTG
[ENA]
¡û
>W1911629764
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1347880
1347953
+
His
GTG
[ENA]
¡û
>W1911655687
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1329311
1329384
+
His
GTG
[ENA]
¡û
>W1911682359
QKNY01000013
Euryarchaeota
Halonotius aquaticus F13-13 [QKNY]
187001
187074
+
His
GTG
[ENA]
¡û
>W1911696483
QMDW01000020
Euryarchaeota
Halonotius pteroides CECT 7525 [QMDW]
34741
34814
+
His
GTG
[ENA]
¡û
>W1911696732
QMIM01000017
Euryarchaeota
Halorubrum sp. 48-1-W [QMIM]
29915
29989
+
His
GTG
[ENA]
¡û
>W1911709551
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
333145
333072
-
His
GTG
[ENA]
¡û
>W1911709652
QPLR01000003
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
6715
6642
-
His
GTG
[ENA]
¡û
>W1911709749
QPLT01000016
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
11953
12026
+
His
GTG
[ENA]
¡û
>W1911709801
QPLU01000004
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
21533
21460
-
His
GTG
[ENA]
¡û
>W1911709832
QPLV01000002
Euryarchaeota
Halorubrum sp. Atlit-8R [QPLV]
21533
21460
-
His
GTG
[ENA]
¡û
>W1911709973
QPND01000006
Euryarchaeota
Saliphagus sp. LR7 [QPND]
163602
163529
-
His
GTG
[ENA]
¡û
>W1911717771
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1540963
1541036
+
His
GTG
[ENA]
¡û
>W1911717995
QQTY01000004
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
25565
25638
+
His
GTG
[ENA]
¡û
>W1610000487
ABEB01000001
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
862161
862234
+
Pseudo
GTG
[ENA]
¡û
>W1610003613
AGCX01000264
Euryarchaeota
Halonotius sp. J07HN4 [AGCX]
3704
3777
+
Pseudo
GTG
[ENA]
¡û
>W1610005946
ALWQ01000005
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
693227
693300
+
Pseudo
GTG
[ENA]
¡û
>W1610011832
AOHU01000102
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
102274
102347
+
Pseudo
GTG
[ENA]
¡û
>W1610011950
AOHX01000028
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
14340
14267
-
Pseudo
GTG
[ENA]
¡û
>W1610012863
AOIV01000025
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
70627
70554
-
Pseudo
GTG
[ENA]
¡û
>W1610012918
AOIW01000066
Euryarchaeota
Halorubrum terrestre JCM 10247 [AOIW]
41382
41455
+
Pseudo
GTG
[ENA]
¡û
>W1610012936
AOJD01000019
Euryarchaeota
Halorubrum tebenquichense DSM 14210 [AOJD]
25108
25181
+
Pseudo
GTG
[ENA]
¡û
>W1610012983
AOJE01000010
Euryarchaeota
Halorubrum saccharovorum DSM 1137 [AOJE]
192491
192418
-
Pseudo
GTG
[ENA]
¡û
>W1610013052
AOJF01000057
Euryarchaeota
Halorubrum litoreum JCM 13561 [AOJF]
2066
2139
+
Pseudo
GTG
[ENA]
¡û
>W1610013099
AOJG01000041
Euryarchaeota
Halorubrum lipolyticum DSM 21995 [AOJG]
200549
200474
-
Pseudo
GTG
[ENA]
¡û
>W1610013114
AOJH01000051
Euryarchaeota
Halorubrum kocurii JCM 14978 [AOJH]
34221
34295
+
Pseudo
GTG
[ENA]
¡û
>W1610013159
AOJI01000022
Euryarchaeota
Halorubrum aidingense JCM 13560 [AOJI]
99679
99752
+
Pseudo
GTG
[ENA]
¡û
>W1610013226
AOJJ01000087
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
52666
52739
+
Pseudo
GTG
[ENA]
¡û
>W1610013249
AOJK01000033
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
44162
44235
+
Pseudo
GTG
[ENA]
¡û
>W1610013297
AOJL01000020
Euryarchaeota
Halorubrum coriense DSM 10284 [AOJL]
84643
84570
-
Pseudo
GTG
[ENA]
¡û
>W1610013329
AOJM01000006
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
25703
25630
-
Pseudo
GTG
[ENA]
¡û
>W1610013374
AOJN01000023
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
51676
51749
+
Pseudo
GTG
[ENA]
¡û
>W1610013432
AOJO01000036
Euryarchaeota
Halorubrum hochstenium ATCC 700873 [AOJO]
15999
16072
+
Pseudo
GTG
[ENA]
¡û
>W1610013879
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
104408
104481
+
Pseudo
GTG
[ENA]
¡û
>W1610019193
ARPZ01000562
Euryarchaeota
Haloquadratum sp. J07HQX50 [ARPZ]
2635
2708
+
Pseudo
GTG
[ENA]
¡û
>W1610019202
ARQA01000222
Euryarchaeota
Halonotius sp. J07HN6 [ARQA]
9397
9470
+
Pseudo
GTG
[ENA]
¡û
>W1610024309
ATXS01000003
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
11522
11447
-
Pseudo
GTG
[ENA]
¡û
>W1610041527
BATA01000012
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
41830
41757
-
Pseudo
GTG
[ENA]
¡û
>W1610061868
BCMZ01000001
Euryarchaeota
Halobacterium sp. CBA1132 [BCMZ]
2260904
2260978
+
Pseudo
GTG
[ENA]
¡û
>W1610083243
CBVY010000002
Euryarchaeota
Halorubrum sp. AJ67 [CBVY]
379898
379825
-
Pseudo
GTG
[ENA]
¡û
>W1610675806
LKIR01000143
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
33967
34040
+
Pseudo
GTG
[ENA]
¡û
>W1610682346
LKMU01000001
Euryarchaeota
Halorubrum sp. PL-Br10_E2g5 [LKMU]
32761
32835
+
Pseudo
GTG
[ENA]
¡û
>W1610682417
LKMY01000001
Euryarchaeota
Nanohaloarchaea archaeon PL-Br10_U2g5 [LKMY]
32761
32835
+
Pseudo
GTG
[ENA]
¡û
>W1610682603
LKNE01000070
Euryarchaeota
Haloferacaceae archaeon Tc-Br11_E2g18 [LKNE]
156
83
-
Pseudo
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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