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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238110 (58 seq.)
>A171000850
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
354907
354835
-
Arg
CCG
-
¡û
>A171001173
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
2783113
2783186
+
Arg
CCG
-
¡û
>A171001391
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
1692867
1692939
+
Arg
CCG
-
¡û
>A171004391
CP008874
Euryarchaeota
Halanaeroarchaeum sulfurireducens HSR2 [CP008874]
264995
265067
+
Arg
CCG
-
¡û
>A171006149
CP011564
Euryarchaeota
Halanaeroarchaeum sulfurireducens M27-SA2 [CP011564]
264789
264861
+
Arg
CCG
-
¡û
>A171006222
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1669103
1669031
-
Arg
CCG
-
¡û
>ENV08001176
ABMR01012762
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
93
18
-
Arg
CCG
[ENA]
¡û
>ENV08001817
ABOG01012225
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
93
21
-
Arg
CCG
[ENA]
¡û
>W1910006695
BBJO01000005
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
37569
37497
-
Arg
CCG
[ENA]
¡û
>W1910186220
CCDK010000001
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
54725
54653
-
Arg
CCG
[ENA]
¡û
>W1910193522
CSTE01000001
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
483051
483123
+
Arg
CCG
[ENA]
¡û
>W1910227066
FNIA01000020
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
5727
5655
-
Arg
CCG
[ENA]
¡û
>W1910227094
FNKQ01000001
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
68616
68544
-
Arg
CCG
[ENA]
¡û
>W1910228445
FNPB01000018
Euryarchaeota
Halobellus clavatus CGMCC 1.10118 [FNPB]
20359
20287
-
Arg
CCG
[ENA]
¡û
>W1910228623
FNVN01000008
Euryarchaeota
Halobellus limi CGMCC 1.10331 [FNVN]
26844
26772
-
Arg
CCG
[ENA]
¡û
>W1910229623
FOAD01000003
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
288540
288612
+
Arg
CCG
[ENA]
¡û
>W1910230724
FOYS01000008
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
48031
48103
+
Arg
CCG
[ENA]
¡û
>W1910230774
FOYT01000007
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
46638
46566
-
Arg
CCG
[ENA]
¡û
>W1911629779
PSYS01000002
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
687261
687333
+
Arg
CCG
[ENA]
¡û
>W1911629832
PSYT01000002
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1105581
1105653
+
Arg
CCG
[ENA]
¡û
>W1911629855
PSYU01000001
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
1151760
1151832
+
Arg
CCG
[ENA]
¡û
>W1911629930
PSYV01000002
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
1302781
1302853
+
Arg
CCG
[ENA]
¡û
>W1911629979
PSYW01000002
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
1157484
1157556
+
Arg
CCG
[ENA]
¡û
>W1911630031
PSYX01000002
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
40275
40203
-
Arg
CCG
[ENA]
¡û
>W1911630082
PSYY01000002
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1177153
1177225
+
Arg
CCG
[ENA]
¡û
>W1911655752
QEQJ01000004
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
367235
367307
+
Arg
CCG
[ENA]
¡û
>W1911709511
QPLO01000002
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1105581
1105653
+
Arg
CCG
[ENA]
¡û
>W1911709560
QPLP01000002
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1105581
1105653
+
Arg
CCG
[ENA]
¡û
>W1911709656
QPLR01000007
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
30194
30121
-
Arg
CCG
[ENA]
¡û
>W1911717801
QQRR01000002
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
6907
6834
-
Arg
CCG
[ENA]
¡û
>W1911717837
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1957411
1957339
-
Arg
CCG
[ENA]
¡û
>W1911769977
QXIJ01000003
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
366902
366974
+
Arg
CCG
[ENA]
¡û
>SRA1001247
SRR001058.10846
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
93
18
-
Arg
CCG
[SRA]
>SRA1013797
SRR023631.22153
High saltern (Pond 5) microbes attempt 1 (SRP001107)
86
11
-
Arg
CCG
[SRA]
>W1610000769
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
1562098
1562026
-
Arg
CCG
[ENA]
¡û
>W1610011529
ANPG01000527
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
1380
1452
+
Arg
CCG
[ENA]
¡û
>W1610011791
AOHT01000053
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
49713
49641
-
Arg
CCG
[ENA]
¡û
>W1610011796
AOHU01000034
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
15442
15514
+
Arg
CCG
[ENA]
¡û
>W1610012853
AOIV01000006
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
73668
73593
-
Arg
CCG
[ENA]
¡û
>W1610013480
AOLD01000038
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
5505
5433
-
Arg
CCG
[ENA]
¡û
>W1610013500
AOLE01000006
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
5505
5433
-
Arg
CCG
[ENA]
¡û
>W1610013561
AOLF01000017
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
5505
5433
-
Arg
CCG
[ENA]
¡û
>W1610013645
AOLG01000054
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
262022
262094
+
Arg
CCG
[ENA]
¡û
>W1610013668
AOLH01000012
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
50223
50295
+
Arg
CCG
[ENA]
¡û
>W1610013710
AOLI01000014
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
40461
40389
-
Arg
CCG
[ENA]
¡û
>W1610013711
AOLI01000014
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
40369
40297
-
Arg
CCG
[ENA]
¡û
>W1610013786
AOLJ01000019
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
185652
185724
+
Arg
CCG
[ENA]
¡û
>W1610013850
AOLK01000024
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
72829
72901
+
Arg
CCG
[ENA]
¡û
>W1610013886
AOLL01000026
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
45130
45058
-
Arg
CCG
[ENA]
¡û
>W1610013943
AOLM01000021
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
42396
42324
-
Arg
CCG
[ENA]
¡û
>W1610013990
AOLN01000017
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
120701
120776
+
Arg
CCG
[ENA]
¡û
>W1610014038
AOLO01000009
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
53646
53573
-
Arg
CCG
[ENA]
¡û
>W1610014057
AOLP01000001
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
416505
416577
+
Arg
CCG
[ENA]
¡û
>W1610784277
LOEP01000005
Euryarchaeota
Haloferax sp. Q22 [LOEP]
249179
249251
+
Arg
CCG
[ENA]
¡û
>W1610799799
LOPU01000028
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
11497
11425
-
Arg
CCG
[ENA]
¡û
>W1610799809
LOPU01000029
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
130
58
-
Arg
CCG
[ENA]
¡û
>W1610799827
LOPV01000037
Euryarchaeota
Haloferax profundi SB29 [LOPV]
12610
12538
-
Arg
CCG
[ENA]
¡û
>W1610799872
LOPW01000010
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
49207
49135
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK