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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.238169 (126 seq.)
>W1710782905
LJFJ01000007
Bacillota
Limosilactobacillus fermentum [LJFJ]
35006
34931
-
Thr
AGT
[ENA]
¡û
>W1710801585
LJWZ01000038
Bacillota
Limosilactobacillus fermentum [LJWZ]
16065
15990
-
Thr
AGT
[ENA]
¡û
>C171057886
CP017151
Bacillota
Limosilactobacillus fermentum NCC2970 [CP017151]
1086650
1086725
+
Thr
AGT
-
¡û
>C171088289
CP019030
Bacillota
Limosilactobacillus fermentum SNUV175 [CP019030]
840551
840476
-
Thr
AGT
-
¡û
>C171115612
CP021104
Bacillota
Limosilactobacillus fermentum FTDC 8312 [CP021104]
190659
190734
+
Thr
AGT
-
¡û
>C171123303
CP021790
Bacillota
Limosilactobacillus fermentum LAC FRN-92 [CP021790]
953232
953157
-
Thr
AGT
-
¡û
>WENV180334936
OBLF01093661
[OBLF] metagenome; feces
354
281
-
Thr
AGT
[ENA]
¢þ
>WENV180410859
OBUX01013428
[OBUX] human gut metagenome; faeces
122
195
+
Thr
AGT
[ENA]
¢þ
>WENV180576376
OCLZ01003701
[OCLZ] human gut metagenome; human gut
63
137
+
Thr
AGT
[ENA]
¢þ
>W141092464
AVAB01000001
Bacillota
Limosilactobacillus fermentum MTCC 8711 [AVAB]
174533
174608
+
Thr
AGT
[ENA]
¡û
>W141094647
AVCT01000178
Bacillota
Limosilactobacillus fermentum 3872 [AVCT]
237
312
+
Thr
AGT
[ENA]
¡û
>WENV181429072
OGCW01020468
[OGCW] metagenome; Human gut stool
29
103
+
Thr
AGT
[ENA]
¢þ
>WENV181464220
OGEP01000352
[OGEP] metagenome; Human gut stool
70401
70327
-
Thr
AGT
[ENA]
¢þ
>WENV181468519
OGES01003246
[OGES] metagenome; Human gut stool
9087
9013
-
Thr
AGT
[ENA]
¢þ
>WENV181472592
OGEZ01003539
[OGEZ] metagenome; Human gut stool
485
559
+
Thr
AGT
[ENA]
¢þ
>WENV181473750
OGFC01000171
[OGFC] metagenome; Human gut stool
402
475
+
Thr
AGT
[ENA]
¢þ
>WENV181481036
OGFI01000114
[OGFI] metagenome; Human gut stool
69773
69700
-
Thr
AGT
[ENA]
¢þ
>WENV181483612
OGFK01010708
[OGFK] metagenome; Human gut stool
48
121
+
Thr
AGT
[ENA]
¢þ
>W141148172
AWXS01000021
Bacillota
Limosilactobacillus fermentum Lf1 [AWXS]
3316
3389
+
Thr
AGT
[ENA]
¡û
>WENV181501589
OGGI01000681
[OGGI] metagenome; Human gut stool
30535
30462
-
Thr
AGT
[ENA]
¢þ
>WENV181516664
OGGZ01000209
[OGGZ] metagenome; Human gut stool
69792
69719
-
Thr
AGT
[ENA]
¢þ
>WENV181537206
OGHW01003146
[OGHW] metagenome; Human gut stool
64
137
+
Thr
AGT
[ENA]
¢þ
>WENV181541336
OGIC01015071
[OGIC] metagenome; Human gut stool
46
120
+
Thr
AGT
[ENA]
¢þ
>WENV181552871
OGIQ01000038
[OGIQ] metagenome; Human gut stool
68
142
+
Thr
AGT
[ENA]
¢þ
>WENV181555716
OGIU01000064
[OGIU] metagenome; Human gut stool
401
475
+
Thr
AGT
[ENA]
¢þ
>WENV181556656
OGIV01000089
[OGIV] metagenome; Human gut stool
435
509
+
Thr
AGT
[ENA]
¢þ
>WENV181558631
OGIX01012981
[OGIX] metagenome; Human gut stool
63
137
+
Thr
AGT
[ENA]
¢þ
>WENV181570841
OGJO01000105
[OGJO] metagenome; Human gut stool
2397
2470
+
Thr
AGT
[ENA]
¢þ
>WENV181574350
OGJT01000071
[OGJT] metagenome; Human gut stool
69403
69330
-
Thr
AGT
[ENA]
¢þ
>WENV181588164
OGKH01001017
[OGKH] metagenome; Human gut stool
2064
2137
+
Thr
AGT
[ENA]
¢þ
>WENV181588603
OGKJ01000119
[OGKJ] metagenome; Human gut stool
1144
1217
+
Thr
AGT
[ENA]
¢þ
>WENV181589757
OGKM01000093
[OGKM] metagenome; Human gut stool
69779
69706
-
Thr
AGT
[ENA]
¢þ
>WENV181671201
OGON01000326
[OGON] human gut metagenome; faeces
38730
38657
-
Thr
AGT
[ENA]
¢þ
>W141180742
AYHA01000080
Bacillota
Limosilactobacillus fermentum NB-22 [AYHA]
8590
8515
-
Thr
AGT
[ENA]
¡û
>WENV181896236
OGXS01000127
[OGXS] human gut metagenome; faeces
3258
3332
+
Thr
AGT
[ENA]
¢þ
>WENV182136039
OHKJ01026617
[OHKJ] human gut metagenome; feces
129
202
+
Thr
AGT
[ENA]
¢þ
>WENV182249159
OHSP01016812
[OHSP] human gut metagenome; feces
649
576
-
Thr
AGT
[ENA]
¢þ
>W141244299
CAKF01000022
Bacillota
Limosilactobacillus ingluviei str. Autruche 4 [CAKF]
79
153
+
Thr
AGT
[ENA]
¡û
>W141244300
CAKF01000024
Bacillota
Limosilactobacillus ingluviei str. Autruche 4 [CAKF]
25000
25075
+
Thr
AGT
[ENA]
¡û
>WENV182477648
OIQL01003131
[OIQL] human gut metagenome; human gut
477
550
+
Thr
AGT
[ENA]
¢þ
>C08006034
AP008937
Bacillota
Limosilactobacillus fermentum IFO 3956 [AP008937]
174326
174401
+
Thr
AGT
[Ensembl]
¡û
>WENV183166777
OLOY01001047
[OLOY] human gut metagenome; faeces
69
142
+
Thr
AGT
[ENA]
¢þ
>WENV183182416
OLPK01000228
[OLPK] human gut metagenome; faeces
69795
69722
-
Thr
AGT
[ENA]
¢þ
>WENV183238280
OLQY01018394
[OLQY] human gut metagenome; faeces
69
142
+
Thr
AGT
[ENA]
¢þ
>WENV183263320
OLRR01000110
[OLRR] human gut metagenome; faeces
69836
69763
-
Thr
AGT
[ENA]
¢þ
>WENV183307262
OLTD01008352
[OLTD] human gut metagenome; faeces
269
196
-
Thr
AGT
[ENA]
¢þ
>WENV183309636
OLVC01000796
[OLVC] human gut metagenome; faeces
1043
970
-
Thr
AGT
[ENA]
¢þ
>WENV183555662
OOBN01007972
[OOBN] human gut metagenome; human gut
1909
1836
-
Thr
AGT
[ENA]
¢þ
>WENV183606009
OODN01000247
[OODN] human gut metagenome; human gut
69
142
+
Thr
AGT
[ENA]
¢þ
>WENV183772318
PPYF01016731
[PPYF] human gut metagenome; stool from patient with Crohn's disease
93
166
+
Thr
AGT
[ENA]
¢þ
>WENV183781172
PPYF01195327
[PPYF] human gut metagenome; stool from patient with Crohn's disease
93
166
+
Thr
AGT
[ENA]
¢þ
>C181004007
AP017973
Bacillota
Limosilactobacillus fermentum MTCC 25067 [AP017973]
190063
190136
+
Thr
AGT
-
¡û
>C181020754
CP016766
Bacillota
Ligilactobacillus agilis La3 [CP016766]
1497141
1497066
-
Thr
AGT
-
¡û
>C181054738
CP021964
Bacillota
Limosilactobacillus fermentum CBA7106 [CP021964]
172570
172643
+
Thr
AGT
-
¡û
>C181196711
CP031195
Bacillota
Limosilactobacillus fermentum LDTM 7301 [CP031195]
1729021
1729094
+
Thr
AGT
-
¡û
>W09122618
ACGI01000005
Bacillota
Limosilactobacillus fermentum ATCC 14931 [ACGI]
300
225
-
Thr
AGT
[ENA]
¡û
>C181226911
LT906621
Bacillota
Limosilactobacillus fermentum IMDO 130101 [LT906621]
166222
166295
+
Thr
AGT
-
¡û
>C191012469
CP016803
Bacillota
Limosilactobacillus fermentum SK152 [CP016803]
1042306
1042233
-
Thr
AGT
-
¡û
>C191105220
CP033371
Bacillota
Limosilactobacillus fermentum DR9 [CP033371]
820313
820240
-
Thr
AGT
-
¡û
>C191119242
CP034099
Bacillota
Limosilactobacillus fermentum LMT2-75 [CP034099]
601724
601651
-
Thr
AGT
-
¡û
>C191121337
CP034193
Bacillota
Limosilactobacillus fermentum YL-11 [CP034193]
160289
160362
+
Thr
AGT
-
¡û
>C191134208
CP035054
Bacillota
Limosilactobacillus fermentum SRCM103285 [CP035054]
1976684
1976611
-
Thr
AGT
-
¡û
>C191134265
CP035055
Bacillota
Limosilactobacillus fermentum SRCM 103290 [CP035055]
1276913
1276840
-
Thr
AGT
-
¡û
>W141805372
JPKN01000286
Bacillota
Lacticaseibacillus paracasei casei [JPKN]
213
287
+
Thr
AGT
[ENA]
¡û
>W1910181284
BJLV01000064
Bacillota
Limosilactobacillus fermentum NBRC 3959 [BJLV]
6238
6165
-
Thr
AGT
[ENA]
¡û
>W1910374043
FUHY01000014
Bacillota
Limosilactobacillus fermentum S13 [FUHY]
1669
1596
-
Thr
AGT
[ENA]
¡û
>W1910374088
FUHZ01000010
Bacillota
Limosilactobacillus fermentum S6 [FUHZ]
1669
1596
-
Thr
AGT
[ENA]
¡û
>W1910642942
LUGD01000047
Bacillota
Ligilactobacillus agilis UMNLA4 [LUGD]
33724
33799
+
Thr
AGT
[ENA]
¡û
>W1910643089
LUGE01000109
Bacillota
Ligilactobacillus agilis UMNLA5 [LUGE]
275
200
-
Thr
AGT
[ENA]
¡û
>W1910643171
LUGO01000090
Bacillota
Ligilactobacillus agilis UMNLA1 [LUGO]
274
199
-
Thr
AGT
[ENA]
¡û
>W1910643197
LUGP01000057
Bacillota
Ligilactobacillus agilis UMNLA2 [LUGP]
33724
33799
+
Thr
AGT
[ENA]
¡û
>W1910643297
LUGQ01000089
Bacillota
Ligilactobacillus agilis UMNLA3 [LUGQ]
274
199
-
Thr
AGT
[ENA]
¡û
>W1910652375
LYQO01000043
Bacillota
Ligilactobacillus agilis UMNLA6 [LYQO]
33724
33799
+
Thr
AGT
[ENA]
¡û
>W1910652498
LYQP01000100
Bacillota
Ligilactobacillus agilis UMNLA7 [LYQP]
33724
33799
+
Thr
AGT
[ENA]
¡û
>W1910652501
LYQQ01000003
Bacillota
Ligilactobacillus agilis UMNLA8 [LYQQ]
33724
33799
+
Thr
AGT
[ENA]
¡û
>W1910954323
NJPQ01000058
Bacillota
Limosilactobacillus fermentum SHI-2 [NJPQ]
3906
3833
-
Thr
AGT
[ENA]
¡û
>W1810058984
PDKX01000055
Bacillota
Limosilactobacillus fermentum NCDC 400 [PDKX]
9408
9335
-
Thr
AGT
[ENA]
¡û
>W1810090612
PGGE01000107
Bacillota
Limosilactobacillus fermentum 103 [PGGE]
281
208
-
Thr
AGT
[ENA]
¡û
>W1810090655
PGGI01000050
Bacillota
Limosilactobacillus fermentum 279 [PGGI]
190
263
+
Thr
AGT
[ENA]
¡û
>W1810185654
PKGI01000020
Bacillota
Ligilactobacillus agilis 268A [PKGI]
7146
7071
-
Thr
AGT
[ENA]
¡û
>W1810185930
PKGM01000031
Bacillota
Ligilactobacillus agilis 273 [PKGM]
7203
7128
-
Thr
AGT
[ENA]
¡û
>W1810190866
PKKD01000113
Bacillota
Limosilactobacillus fermentum UMB0187 [PKKD]
279
206
-
Thr
AGT
[ENA]
¡û
>W1810196560
PNBB01000122
Bacillota
Limosilactobacillus fermentum LfU21 [PNBB]
194
267
+
Thr
AGT
[ENA]
¡û
>W1810223780
POTQ01000022
Bacillota
Limosilactobacillus fermentum CRL1446 [POTQ]
29018
28945
-
Thr
AGT
[ENA]
¡û
>W1810473353
QAHK01000078
Bacillota
Limosilactobacillus fermentum DS13_7 [QAHK]
1740
1667
-
Thr
AGT
[ENA]
¡û
>W1810489184
QAZV01000087
Bacillota
Limosilactobacillus fermentum DS19_7 [QAZV]
190
263
+
Thr
AGT
[ENA]
¡û
>W1810595186
QGDR01000006
Bacillota
Limosilactobacillus mucosae AGR63 [QGDR]
11713
11786
+
Thr
AGT
[ENA]
¡û
>W1810695528
QLNN01000123
Bacillota
Limosilactobacillus fermentum LF2 [QLNN]
463
390
-
Thr
AGT
[ENA]
¡û
>W1810705671
QMJM01000079
Bacillota
Limosilactobacillus fermentum KMB_613 [QMJM]
3542
3615
+
Thr
AGT
[ENA]
¡û
>W1810811209
QRYA01000011
Bacillota
Limosilactobacillus fermentum AF16-22LB [QRYA]
110
183
+
Thr
AGT
[ENA]
¡û
>W1810811869
QRYM01000075
Bacillota
Limosilactobacillus fermentum AF15-40LB [QRYM]
923
850
-
Thr
AGT
[ENA]
¡û
>C151075292
CP011013
Bacillota
Limosilactobacillus mucosae LM1 [CP011013]
2166677
2166602
-
Thr
AGT
[Ensembl]
¡û
>C151084231
CP011536
Bacillota
Limosilactobacillus fermentum 3872 [CP011536]
183874
183949
+
Thr
AGT
-
¡û
>W1510021806
BCAH01000046
Bacillota
Limosilactobacillus gorillae KZ01 [BCAH]
80
155
+
Thr
AGT
[ENA]
¡û
>W1510022565
CBZV010000057
Bacillota
Limosilactobacillus fermentum 222 [CBZV]
79
154
+
Thr
AGT
[ENA]
¡û
>C10108334
CP002033
Bacillota
Limosilactobacillus fermentum CECT 5716 [CP002033]
174743
174818
+
Thr
AGT
[Ensembl]
¡û
>W1510650158
CVQW01000006
Bacillota
Limosilactobacillus mucosae LM1 Marseille [CVQW]
141
216
+
Thr
AGT
[ENA]
¡û
>W1510650335
CVQY01000012
Bacillota
Ligilactobacillus agilis Marseille [CVQY]
62984
63059
+
Thr
AGT
[ENA]
¡û
>W1511352330
JROC01000019
Bacillota
Limosilactobacillus mucosae CRL573 [JROC]
248
323
+
Thr
AGT
[ENA]
¡û
>W1511388708
JSWI01000015
Bacillota
Limosilactobacillus mucosae DPC 6426 [JSWI]
1495
1570
+
Thr
AGT
[ENA]
¡û
>W1511443797
JUTH01000137
Bacillota
Limosilactobacillus fermentum 779_LFER [JUTH]
3298
3373
+
Thr
AGT
[ENA]
¡û
>W1511589546
LBDH01000051
Bacillota
Limosilactobacillus fermentum 90 TC-4 [LBDH]
254
329
+
Thr
AGT
[ENA]
¡û
>C161077712
CP014787
Bacillota
Limosilactobacillus oris J-1 [CP014787]
1728437
1728362
-
Thr
AGT
-
¡û
>W1610031185
AYYP01000044
Bacillota
Ligilactobacillus agilis DSM 20509 [AYYP]
392
317
-
Thr
AGT
[ENA]
¡û
>W1610035630
AZEQ01000014
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
69755
69680
-
Thr
AGT
[ENA]
¡û
>W1610036630
AZFK01000085
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
2616
2542
-
Thr
AGT
[ENA]
¡û
>W1610036632
AZFK01000088
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
70035
70110
+
Thr
AGT
[ENA]
¡û
>W1610083161
CBUR010000022
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
158
233
+
Thr
AGT
[ENA]
¡û
>W121033308
AHIT01000005
Bacillota
Limosilactobacillus mucosae LM1 [AHIT]
15
90
+
Thr
AGT
[ENA]
¡û
>C131016154
CP005958
Bacillota
Limosilactobacillus fermentum F-6 [CP005958]
173404
173479
+
Thr
AGT
[Ensembl]
¡û
>W1610527957
JQAU01000084
Bacillota
Limosilactobacillus fermentum [JQAU]
120
195
+
Thr
AGT
[ENA]
¡û
>W1610528214
JQBA01000016
Bacillota
Limosilactobacillus ingluviei [JQBA]
144
218
+
Thr
AGT
[ENA]
¡û
>W1610528224
JQBA01000040
Bacillota
Limosilactobacillus ingluviei [JQBA]
3469
3394
-
Thr
AGT
[ENA]
¡û
>W1610647413
LJFJ01000007
Bacillota
Limosilactobacillus fermentum [LJFJ]
35006
34931
-
Thr
AGT
[ENA]
¡û
>W1610665542
LJWZ01000038
Bacillota
Limosilactobacillus fermentum [LJWZ]
16065
15990
-
Thr
AGT
[ENA]
¡û
>W1710028137
AYYP01000044
Bacillota
Ligilactobacillus agilis DSM 20509 [AYYP]
392
317
-
Thr
AGT
[ENA]
¡û
>W1710032669
AZEQ01000014
Bacillota
Limosilactobacillus mucosae DSM 13345 [AZEQ]
69755
69680
-
Thr
AGT
[ENA]
¡û
>W1710033669
AZFK01000085
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
2616
2542
-
Thr
AGT
[ENA]
¡û
>W1710033671
AZFK01000088
Bacillota
Limosilactobacillus ingluviei DSM 15946 [AZFK]
70035
70110
+
Thr
AGT
[ENA]
¡û
>W1710088281
CBUR010000022
Bacillota
Limosilactobacillus fermentum L930BB [CBUR]
158
233
+
Thr
AGT
[ENA]
¡û
>W1710523881
FNIH01000009
Bacillota
Limosilactobacillus mucosae [FNIH]
69921
69846
-
Thr
AGT
[ENA]
¡û
>W1710543422
FNZY01000010
Bacillota
Limosilactobacillus mucosae [FNZY]
278
353
+
Thr
AGT
[ENA]
¡û
>W1710566944
FOSI01000009
Bacillota
Limosilactobacillus mucosae [FOSI]
298
373
+
Thr
AGT
[ENA]
¡û
>W1710629588
JQAU01000084
Bacillota
Limosilactobacillus fermentum [JQAU]
120
195
+
Thr
AGT
[ENA]
¡û
>W1710629804
JQBA01000016
Bacillota
Limosilactobacillus ingluviei [JQBA]
144
218
+
Thr
AGT
[ENA]
¡û
>W1710629814
JQBA01000040
Bacillota
Limosilactobacillus ingluviei [JQBA]
3469
3394
-
Thr
AGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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