This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.23817 (26 seq.)
>W1710784283
LJGV01000021
Actinomycetota
Streptomyces qinglanensis [LJGV]
743259
743346
+
Ser
TGA
[ENA]
¡û
>W1710784499
LJGY01000980
Actinomycetota
Streptomyces nanshensis [LJGY]
378
291
-
Ser
TGA
[ENA]
¡û
>W131204728
ATCE01000048
Actinomycetota
Streptomyces sp. HPH0547 [ATCE]
52649
52736
+
Ser
TGA
[ENA]
¡û
>W131234085
AUKN01000006
Actinomycetota
Streptomyces sp. CNT318 [AUKN]
369635
369722
+
Ser
TGA
[ENA]
¡û
>W131234176
AUKO01000023
Actinomycetota
Streptomyces sp. CNT360 [AUKO]
43061
43148
+
Ser
TGA
[ENA]
¡û
>W141755720
JNWT01000001
Actinomycetota
Streptomyces graminis [JNWT]
322064
322151
+
Ser
TGA
[ENA]
¡û
>W141765934
JODR01000001
Actinomycetota
Streptomyces albus subsp. albus [JODR]
94892
94805
-
Ser
TGA
[ENA]
¡û
>W141766452
JODZ01000006
Actinomycetota
Streptomyces albus subsp. albus [JODZ]
7487
7398
-
Ser
TGA
[ENA]
¡û
>W141770339
JOGK01000015
Actinomycetota
Streptomyces sp. NRRL F-5639 [JOGK]
42419
42506
+
Ser
TGA
[ENA]
¡û
>W141772183
JOHQ01000038
Actinomycetota
Streptomyces sp. NRRL F-5917 [JOHQ]
41500
41587
+
Ser
TGA
[ENA]
¡û
>W1910572924
JNNY01000078
Actinomycetota
Streptomyces qinglanensis 172205 [JNNY]
21004
21091
+
Ser
TGA
[ENA]
¡û
>W1810073147
PEFS01000001
Actinomycetota
Streptomyces sp. CNZ279 [PEFS]
3915812
3915724
-
Ser
TGA
[ENA]
¡û
>W1810735393
QOIM01000037
Actinomycetota
Streptomyces reniochalinae LHW50302 [QOIM]
94782
94695
-
Ser
TGA
[ENA]
¡û
>W1810735477
QOIN01000073
Actinomycetota
Streptomyces diacarni philanthi LHW51701 [QOIN]
34876
34789
-
Ser
TGA
[ENA]
¡û
>W1510014833
BBQG01000067
Actinomycetota
Streptomyces albus NBRC 13014 [BBQG]
18045
17958
-
Ser
TGA
[ENA]
¡û
>W121104693
ALAP01000106
Actinomycetota
Streptomyces sp. AA1529 [ALAP]
3619
3532
-
Ser
TGA
[ENA]
¡û
>W1610614985
LGKH01000001
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
144237
144148
-
Ser
TGA
[ENA]
¡û
>W1610632031
LIPO01000062
Actinomycetota
Streptomyces albus almquistii [LIPO]
1127
1214
+
Ser
TGA
[ENA]
¡û
>W1610633218
LIQO01000125
Actinomycetota
Streptomyces albus flocculus [LIQO]
8455
8542
+
Ser
TGA
[ENA]
¡û
>W1610633271
LIQP01000140
Actinomycetota
Streptomyces albus gibsonii [LIQP]
23
110
+
Ser
TGA
[ENA]
¡û
>W1710552027
FOGO01000002
Actinomycetota
Streptomyces qinglanensis [FOGO]
499219
499306
+
Ser
TGA
[ENA]
¡û
>W1710619299
JHEJ01000065
Actinomycetota
Streptomyces nanshensis [JHEJ]
753723
753810
+
Ser
TGA
[ENA]
¡û
>W1710736231
LGKH01000001
Actinomycetota
Streptomyces sp. NRRL F-6602 [LGKH]
144237
144148
-
Ser
TGA
[ENA]
¡û
>W1710766417
LIPO01000062
Actinomycetota
Streptomyces albus almquistii [LIPO]
1127
1214
+
Ser
TGA
[ENA]
¡û
>W1710767650
LIQO01000125
Actinomycetota
Streptomyces albus flocculus [LIQO]
8455
8542
+
Ser
TGA
[ENA]
¡û
>W1710767703
LIQP01000140
Actinomycetota
Streptomyces albus gibsonii [LIQP]
23
110
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK